Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   JGX27_RS02500 Genome accession   NZ_CP077423
Coordinates   456508..457116 (-) Length   202 a.a.
NCBI ID   WP_009853556.1    Uniprot ID   A0A139QVJ2
Organism   Streptococcus gallolyticus subsp. gallolyticus TX20005     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 451508..462116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  JGX27_RS02485 (JGX27_02485) nadE 451828..452652 (+) 825 WP_009853553.1 ammonia-dependent NAD(+) synthetase -
  JGX27_RS02490 (JGX27_02490) pepC 452871..454208 (+) 1338 WP_009853554.1 aminopeptidase C -
  JGX27_RS02495 (JGX27_02495) pbp1a 454293..456521 (-) 2229 WP_009853555.1 penicillin-binding protein PBP1A -
  JGX27_RS02500 (JGX27_02500) recU 456508..457116 (-) 609 WP_009853556.1 Holliday junction resolvase RecU Machinery gene
  JGX27_RS02505 (JGX27_02505) - 457191..457709 (+) 519 WP_009853557.1 DUF1273 domain-containing protein -
  JGX27_RS02510 (JGX27_02510) gpsB 457836..458177 (+) 342 WP_009853558.1 cell division regulator GpsB -
  JGX27_RS02520 (JGX27_02520) - 458807..459979 (+) 1173 WP_009853559.1 class I SAM-dependent RNA methyltransferase -
  JGX27_RS02525 (JGX27_02525) - 460038..461564 (+) 1527 WP_009853560.1 cell division site-positioning protein MapZ family protein -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 23145.69 Da        Isoelectric Point: 10.1241

>NTDB_id=506294 JGX27_RS02500 WP_009853556.1 456508..457116(-) (recU) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
MVNYPHHLIRKQAVPASKKVKKSSVNFANRGMSFEAAINETNNYYLSRNIAVIHKKPTPIQIVKVDYPKRSRAKIVEAYF
RQASTTDYSGVYKGRYIDFEAKETRQKTSMPLKNFHAHQIEHMANVLKQDGICFVLLHFSTLKETYFLPASALVDFYQIN
LGTKSMPLDYIRKNGYVVTTSSLPQVPYLDIIDQKILGGDHN

Nucleotide


Download         Length: 609 bp        

>NTDB_id=506294 JGX27_RS02500 WP_009853556.1 456508..457116(-) (recU) [Streptococcus gallolyticus subsp. gallolyticus TX20005]
ATGGTTAATTACCCTCATCATCTTATTCGAAAACAAGCAGTTCCTGCTTCTAAAAAGGTGAAAAAATCATCCGTTAACTT
TGCTAATCGTGGGATGAGTTTTGAGGCAGCAATTAATGAAACCAATAATTATTACTTATCTCGTAATATTGCTGTCATTC
ATAAAAAACCAACACCGATTCAAATTGTTAAAGTTGATTATCCGAAAAGAAGCCGTGCCAAAATTGTAGAAGCCTACTTT
CGACAAGCTTCCACGACCGATTATTCTGGTGTCTATAAAGGGCGCTATATCGACTTTGAAGCCAAAGAAACGCGGCAAAA
GACATCTATGCCATTGAAAAATTTCCACGCTCACCAGATTGAGCACATGGCAAATGTTTTAAAACAAGACGGCATCTGCT
TTGTTCTACTTCATTTTTCGACACTTAAGGAAACTTATTTTCTACCTGCTAGTGCTCTAGTAGATTTTTACCAAATCAAT
CTCGGCACCAAATCCATGCCACTTGATTATATCAGAAAAAATGGTTATGTGGTGACAACAAGTTCACTACCTCAAGTTCC
TTATTTAGATATTATTGATCAAAAAATTTTAGGCGGTGATCACAATTAA

Domains

Predicted by InterProScan.

Recombination protein U (RecU)

(30-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A139QVJ2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

51.269

97.525

0.5