Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I2432_RS01280 Genome accession   NZ_CP065054
Coordinates   242736..244097 (+) Length   453 a.a.
NCBI ID   WP_206159071.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 237736..249097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2432_RS01265 (LJFMMFNO_00247) - 239311..241107 (+) 1797 WP_206158941.1 ABC transporter ATP-binding protein -
  I2432_RS01270 (LJFMMFNO_00248) - 241258..242025 (+) 768 WP_043025106.1 epoxyqueuosine reductase QueH -
  I2432_RS01275 (LJFMMFNO_00249) - 242224..242670 (+) 447 WP_037580461.1 dUTP diphosphatase -
  I2432_RS01280 (LJFMMFNO_00250) radA 242736..244097 (+) 1362 WP_206159071.1 DNA repair protein RadA Machinery gene
  I2432_RS01285 (LJFMMFNO_00251) - 244258..244536 (-) 279 WP_115250537.1 hypothetical protein -
  I2432_RS01290 (LJFMMFNO_00252) - 244871..245377 (+) 507 WP_115250538.1 carbonic anhydrase -
  I2432_RS01295 (LJFMMFNO_00253) - 245505..246218 (+) 714 WP_206158942.1 TIGR00266 family protein -
  I2432_RS01300 (LJFMMFNO_00254) gltX 246974..248419 (+) 1446 WP_206158943.1 glutamate--tRNA ligase -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 49272.67 Da        Isoelectric Point: 7.0273

>NTDB_id=506286 I2432_RS01280 WP_206159071.1 242736..244097(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
MAKKKARFICGECGYQSPKYLGRCPNCSAWSSFVEEAEVKDVKNARISLTGEKSKPIKLKHVNGVRYQRIQTEMNEFNRV
LGGGVVPGSLVLIGGDPGIGKSTLLLQVSIQLADKGTVLYVSGEESAEQIKMRSDRLGQTDNDFYLYAETNMQAIRAEIE
AIQPDFLIIDSIQTIMSPDISGVQGSVSQVREVTAELLQLAKSNHIATFIVGHVTKEGTLAGPRMLEHMVDTVLYFEGER
HHTFRILRAVKNRFGSTNEIGIFDMQSGGLVEVLNPSQVFLEERLDGATGSAVVVTMEGSRPILAEVQALVTPTVFGNAR
RTTTGLDFNRVSLIMAVLEKRCGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVAIASSYKEKPTNPQEAFLGEIGLTGDVR
RVTRIEQRINEAAKLGFTKLYAPKSSLQGIDLPKGIEVVGVTTVGEVLKAVFA

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=506286 I2432_RS01280 WP_206159071.1 242736..244097(+) (radA) [Streptococcus equi subsp. zooepidemicus strain SEZ13]
ATAGCTAAGAAAAAGGCAAGGTTTATCTGTGGGGAATGTGGCTATCAGTCACCCAAATATCTGGGGCGTTGCCCTAATTG
CTCTGCCTGGTCTTCTTTTGTAGAGGAGGCTGAGGTCAAGGATGTCAAAAATGCCCGTATTAGCCTGACTGGAGAAAAAA
GTAAGCCCATCAAGCTAAAGCATGTCAATGGCGTTCGCTACCAGCGTATCCAGACTGAGATGAATGAGTTCAATCGTGTG
CTGGGCGGAGGTGTTGTGCCGGGGAGCTTGGTGTTGATTGGTGGTGATCCTGGTATTGGTAAGTCAACATTGCTTTTGCA
GGTATCTATCCAGCTTGCAGATAAGGGAACTGTTTTATATGTCTCTGGAGAGGAATCGGCAGAGCAGATCAAGATGCGCA
GTGACCGCTTGGGACAGACCGACAATGACTTTTACCTCTATGCAGAGACCAATATGCAGGCAATTCGAGCAGAGATTGAA
GCCATTCAGCCGGACTTTTTGATTATTGACTCCATTCAGACCATTATGAGTCCTGATATTTCCGGTGTTCAAGGCTCGGT
TAGTCAGGTGAGAGAGGTCACTGCCGAGCTGCTCCAGCTAGCTAAGTCTAATCATATTGCAACCTTTATTGTAGGACATG
TCACCAAGGAAGGTACCCTAGCAGGGCCTCGCATGCTGGAGCATATGGTTGATACGGTCCTTTATTTTGAGGGCGAGAGG
CATCATACCTTTCGTATCTTGCGAGCGGTTAAAAATCGTTTTGGTTCAACCAATGAGATTGGTATTTTTGACATGCAATC
AGGTGGCTTAGTGGAGGTTCTCAACCCCAGTCAGGTTTTCTTAGAGGAGCGTCTGGACGGCGCAACAGGCTCTGCTGTGG
TAGTCACCATGGAGGGGAGCAGACCGATTTTAGCTGAGGTGCAGGCCTTGGTGACACCGACTGTTTTTGGTAATGCTAGA
CGAACGACAACTGGGTTGGACTTTAATCGTGTTAGTCTGATTATGGCTGTTTTGGAAAAGCGCTGCGGGCTTTTATTACA
AAATCAAGATGCCTATCTCAAATCAGCAGGCGGTGTTAAGCTAGATGAGCCTGCTATTGACTTGGCAGTTGCTGTGGCGA
TTGCCTCTAGCTACAAGGAAAAACCGACCAACCCTCAGGAGGCTTTTTTAGGAGAGATTGGCTTGACTGGTGATGTTCGG
CGTGTGACCCGTATTGAGCAGCGGATCAATGAAGCTGCTAAGCTTGGTTTTACCAAGCTTTACGCGCCTAAAAGCTCATT
GCAGGGGATTGATCTGCCAAAGGGGATTGAGGTTGTTGGTGTGACGACAGTAGGAGAGGTTTTAAAGGCAGTCTTTGCTT
AG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(60-218)

Subunit ChlI of Mg-chelatase (ChlI)

(360-425)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

84.327

100

0.843
  radA Streptococcus pneumoniae D39

84.327

100

0.843
  radA Streptococcus pneumoniae R6

84.327

100

0.843
  radA Streptococcus pneumoniae TIGR4

84.327

100

0.843
  radA Streptococcus mitis NCTC 12261

83.885

100

0.839
  radA Streptococcus mitis SK321

83.885

100

0.839
  radA Bacillus subtilis subsp. subtilis str. 168

61.589

100

0.616