Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   MY9_RS13890 Genome accession   NC_017743
Coordinates   2727692..2728438 (-) Length   248 a.a.
NCBI ID   WP_081483634.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2722692..2733438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS13865 (MY9_2786) mreC 2723099..2723971 (-) 873 WP_040082268.1 rod shape-determining protein MreC -
  MY9_RS13870 (MY9_2787) mreB 2724002..2725015 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  MY9_RS13875 (MY9_2788) radC 2725107..2725802 (-) 696 WP_014664850.1 DNA repair protein RadC -
  MY9_RS13880 (MY9_2789) - 2725839..2726408 (-) 570 WP_014664851.1 Maf family nucleotide pyrophosphatase -
  MY9_RS13885 (MY9_2790) - 2726560..2727558 (-) 999 WP_014664852.1 SPOR domain-containing protein -
  MY9_RS13890 (MY9_2791) comC 2727692..2728438 (-) 747 WP_081483634.1 A24 family peptidase Machinery gene
  MY9_RS13895 (MY9_2792) - 2728578..2729870 (-) 1293 WP_014664854.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  MY9_RS13900 (MY9_2793) valS 2729930..2732572 (-) 2643 WP_014664855.1 valine--tRNA ligase -
  MY9_RS13905 (MY9_2794) - 2733020..2733211 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26546.14 Da        Isoelectric Point: 10.0061

>NTDB_id=50628 MY9_RS13890 WP_081483634.1 2727692..2728438(-) (comC) [Bacillus sp. JS]
MLFILFIFGLILGSFYYTAGRRIPLHLSIIAPRSSCSFCRRALTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGMSLELLTAVVFLSLLIIVAVTDLHYMLIPNRILIFFLPFLVAARLISPLDSWYAGLLGAAAGFLFLALI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGSAAVLTGRLAKKQPLPFAPAIAAGSILTYLYGDSIIS
FYIKMASG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=50628 MY9_RS13890 WP_081483634.1 2727692..2728438(-) (comC) [Bacillus sp. JS]
ATGCTATTCATTCTTTTTATCTTCGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGACGCCGTATCCCCTTACATCT
ATCTATTATCGCGCCCCGTTCATCATGCTCGTTTTGCCGGCGGGCTTTGACCCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCGGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCATGTCGCTGGAATTGTTAACCGCTGTCGTGTTTCTCTCTCTTCTCAT
TATTGTTGCAGTGACAGATCTTCATTATATGCTGATTCCAAATCGAATATTGATTTTTTTCCTTCCCTTTTTGGTCGCTG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCTGCAGCCGGATTTCTATTTCTGGCTTTAATT
GCCGCAATCACTCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCGGCTGCCTTTTTCTTTTCTGTTTTGATAGGCGCATTGTACGGGTCGGCAGCTGTTCTGACTGGTAGACTCGCCA
AAAAGCAGCCGCTTCCCTTTGCCCCCGCAATAGCGGCAGGGAGTATTTTAACCTATTTATACGGGGACTCTATCATTTCG
TTTTATATCAAAATGGCATCGGGATGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

93.548

100

0.935

Multiple sequence alignment