Detailed information NTG0506267

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: IV454_RS13875
• Genome accession: NZ_CP065053
• Coordinates: 3067953..3069104 (-)
• Length: 383 a.a.
• NCBI ID: WP_206091920.1
• Uniprot ID: -
• Organism: Massilia antarctica strain P8398
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3062953..3074104

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IV454_RS13855 (IV454_13845)	rpoH	3063666..3064565 (-)	900	WP_054266431.1	RNA polymerase sigma factor RpoH	-
IV454_RS13860 (IV454_13850)	-	3065154..3066176 (+)	1023	WP_206091917.1	Rpn family recombination-promoting nuclease/putative transposase	-
IV454_RS13865 (IV454_13855)	ftsX	3066355..3067275 (-)	921	WP_206091918.1	permease-like cell division protein FtsX	-
IV454_RS13870 (IV454_13860)	-	3067272..3067946 (-)	675	WP_206091919.1	cell division ATP-binding protein FtsE	-
IV454_RS13875 (IV454_13865)	pilA	3067953..3069104 (-)	1152	WP_206091920.1	signal recognition particle-docking protein FtsY	Machinery gene
IV454_RS13880 (IV454_13870)	-	3069248..3070189 (-)	942	WP_206091921.1	MerR family transcriptional regulator	-
IV454_RS13885 (IV454_13875)	-	3070490..3071794 (+)	1305	WP_206092666.1	NAD(P)/FAD-dependent oxidoreductase	-
IV454_RS13890 (IV454_13880)	-	3071781..3072587 (+)	807	WP_206091922.1	DUF1365 domain-containing protein	-
IV454_RS13895 (IV454_13885)	-	3072584..3073816 (+)	1233	WP_206091923.1	cyclopropane-fatty-acyl-phospholipid synthase family protein	-

Sequence

Protein

• Length: 383 a.a.
• Molecular weight: 40736.29 Da
• Isoelectric Point: 6.8949

>NTDB_id=506267 IV454_RS13875 WP_206091920.1 3067953..3069104(-) (pilA) [Massilia antarctica strain P8398]
MFSFFKKKPPAPDLAPPPQSAPPPPVAAVPPPVVPPAPVAAQAPAAPPSRRYGSTSTFVAPPPAPVFGSELISETAERLG
NDSDSKSSWMARLKAGLSKTSNNLSLLFVGARIDEDLYEELEAALLMSDAGMDATDYLLTELRRKVKEDKLLDAAAVKAA
LKVLMTDMLRPLVKPLELGRHEPLVLMIAGVNGAGKTTTIGKLAKHMQKYEQSVLLAAGDTFRAAAREQLMVWGQRNNVT
VIAQESGDPAAVAFDAVQSGKARKMDVVMVDTAGRLPTQLHLMEELKKIKRVIGKGMDGAPHEVLLVIDGNTGQNALAQV
KAFDDALQLTGLVITKLDGTAKGGVLAAIARTRPIPVYFIGVGEKIEDLQPFSADDFVEALLG

Nucleotide

• Length: 1152 bp

>NTDB_id=506267 IV454_RS13875 WP_206091920.1 3067953..3069104(-) (pilA) [Massilia antarctica strain P8398]
ATGTTTAGTTTTTTTAAGAAAAAACCGCCCGCTCCCGATCTTGCGCCGCCACCGCAGAGCGCTCCGCCTCCGCCGGTAGC
GGCCGTGCCCCCACCCGTCGTGCCGCCCGCCCCCGTCGCCGCGCAGGCGCCTGCCGCGCCCCCGTCACGCCGTTACGGCA
GCACCTCGACCTTCGTCGCGCCGCCGCCGGCGCCCGTCTTCGGCAGCGAGCTGATTTCGGAAACCGCCGAGCGCCTCGGC
AACGACAGCGACAGCAAAAGCTCATGGATGGCGCGCCTGAAAGCGGGCCTGTCGAAGACCTCGAACAATCTGAGCCTGCT
GTTCGTGGGCGCCCGCATCGATGAAGACCTGTACGAGGAACTCGAAGCGGCCCTGCTCATGTCCGACGCCGGCATGGATG
CCACCGATTACCTGCTCACCGAGCTGCGCCGCAAAGTCAAGGAAGACAAGCTGCTCGATGCGGCCGCCGTCAAGGCCGCG
CTCAAGGTGCTCATGACCGACATGCTGCGCCCGCTCGTCAAGCCGCTCGAACTGGGCCGCCACGAACCGCTGGTGCTGAT
GATCGCTGGCGTGAACGGCGCCGGCAAGACCACCACCATCGGCAAGCTCGCCAAGCACATGCAGAAGTACGAGCAATCGG
TGCTGCTGGCCGCCGGCGACACCTTCCGCGCCGCCGCGCGCGAGCAATTGATGGTCTGGGGCCAGCGCAACAATGTCACC
GTGATCGCCCAGGAATCGGGCGACCCGGCCGCCGTGGCTTTCGACGCCGTGCAGTCCGGCAAGGCGCGCAAGATGGACGT
GGTCATGGTCGACACGGCCGGGCGCCTGCCGACCCAGCTGCACCTGATGGAAGAACTGAAAAAGATCAAGCGCGTGATCG
GCAAGGGCATGGATGGCGCCCCGCACGAAGTGCTGCTGGTCATCGACGGCAATACCGGCCAGAATGCCCTGGCCCAGGTC
AAGGCCTTCGACGACGCCTTGCAGCTGACCGGCCTCGTCATTACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTGGC
CGCGATCGCCCGTACCCGCCCGATTCCCGTGTATTTCATCGGGGTCGGCGAAAAAATCGAAGACTTGCAACCGTTCAGCG
CCGACGACTTCGTCGAGGCGCTGCTGGGATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (184-383)

• SRP54-type protein, helical bundle domain (SRP54_N) (109-162)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.618	99.739	0.525