Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   IV454_RS03125 Genome accession   NZ_CP065053
Coordinates   708657..709058 (-) Length   133 a.a.
NCBI ID   WP_054268473.1    Uniprot ID   A0AA90Q078
Organism   Massilia antarctica strain P8398     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 703657..714058
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IV454_RS03110 (IV454_03105) - 705366..707687 (-) 2322 WP_229522031.1 methyl-accepting chemotaxis protein -
  IV454_RS03115 (IV454_03110) - 707732..708265 (-) 534 WP_054268475.1 chemotaxis protein CheW -
  IV454_RS03120 (IV454_03115) - 708268..708639 (-) 372 WP_054268474.1 response regulator transcription factor -
  IV454_RS03125 (IV454_03120) pilG 708657..709058 (-) 402 WP_054268473.1 PleD family two-component system response regulator Regulator
  IV454_RS03130 (IV454_03125) - 709164..709316 (-) 153 WP_054268606.1 rubredoxin -
  IV454_RS03135 (IV454_03130) - 709424..710278 (+) 855 WP_206090251.1 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase -
  IV454_RS03140 (IV454_03135) hemL 710275..711564 (+) 1290 WP_206090253.1 glutamate-1-semialdehyde 2,1-aminomutase -
  IV454_RS32645 - 711615..712997 (-) 1383 WP_229522033.1 hypothetical protein -
  IV454_RS32650 - 712994..714049 (-) 1056 WP_229522035.1 glycoside hydrolase family 55 protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14656.91 Da        Isoelectric Point: 7.3217

>NTDB_id=506252 IV454_RS03125 WP_054268473.1 708657..709058(-) (pilG) [Massilia antarctica strain P8398]
MTTLPQPNVLKIMVIDDSSTIRRSAEIFLTQAGYQVVLAEDGFDALAKINDHHPSLIFCDILMPRLDGYQTCALIKRSAR
FHATPVLMLSSKDGLFDRARGLMVGSSAYLTKPFSKDSLLSAVREHTADADSK

Nucleotide


Download         Length: 402 bp        

>NTDB_id=506252 IV454_RS03125 WP_054268473.1 708657..709058(-) (pilG) [Massilia antarctica strain P8398]
ATGACGACATTGCCGCAACCGAATGTACTGAAAATCATGGTGATCGACGACAGCAGCACGATCCGTCGTTCGGCCGAGAT
TTTTCTCACCCAGGCCGGGTATCAGGTGGTGCTGGCCGAAGATGGTTTCGATGCCCTCGCCAAGATTAACGACCATCATC
CGTCGCTGATTTTCTGCGACATCCTGATGCCACGCCTCGATGGCTACCAGACGTGCGCGCTGATCAAGCGCAGCGCGCGT
TTTCACGCCACCCCGGTGCTGATGCTCTCATCGAAGGATGGCCTGTTCGACCGCGCCCGCGGCCTGATGGTTGGTTCTTC
CGCCTATCTTACCAAACCCTTCAGCAAAGACAGTCTGCTCAGCGCGGTGCGCGAACATACTGCCGACGCCGACTCAAAAT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(12-123)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

63.025

89.474

0.564