Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   IVB58_RS16550 Genome accession   NZ_CP065051
Coordinates   3495282..3495755 (-) Length   157 a.a.
NCBI ID   WP_001214059.1    Uniprot ID   A0A009PK04
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3490282..3500755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS16535 (IVB58_16485) pilX 3492911..3493729 (-) 819 WP_000149374.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  IVB58_RS16540 (IVB58_16490) pilW 3493726..3494727 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  IVB58_RS16545 (IVB58_16495) pilV 3494728..3495288 (-) 561 WP_086300325.1 type IV pilus modification protein PilV Machinery gene
  IVB58_RS16550 (IVB58_16500) fimU 3495282..3495755 (-) 474 WP_001214059.1 GspH/FimT family pseudopilin Machinery gene
  IVB58_RS16555 (IVB58_16505) ispH 3495925..3496875 (-) 951 WP_000407064.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  IVB58_RS16560 (IVB58_16510) gmk 3496998..3497627 (+) 630 WP_000015937.1 guanylate kinase -
  IVB58_RS16565 (IVB58_16515) rpoZ 3497700..3497978 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  IVB58_RS16570 (IVB58_16520) - 3498017..3498147 (+) 131 Protein_3233 hypothetical protein -
  IVB58_RS16575 (IVB58_16525) - 3498187..3500292 (+) 2106 WP_001117590.1 HD domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16837.47 Da        Isoelectric Point: 9.3085

>NTDB_id=506242 IVB58_RS16550 WP_001214059.1 3495282..3495755(-) (fimU) [Acinetobacter baumannii strain 2016GDAB1]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWKTASNNTLELKNIAADGTQSSLTTTTLAFNANGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=506242 IVB58_RS16550 WP_001214059.1 3495282..3495755(-) (fimU) [Acinetobacter baumannii strain 2016GDAB1]
ATGAGGGGAATTATTCCACAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCAGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGTCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGAAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACTCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGCAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Type II transport protein GspH (GspH)

(47-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009PK04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994