Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   MY9_RS12980 Genome accession   NC_017743
Coordinates   2556924..2557334 (-) Length   136 a.a.
NCBI ID   WP_014664682.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2551924..2562334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS12945 (MY9_2594) - 2552364..2552882 (-) 519 WP_003226126.1 YqeG family HAD IIIA-type phosphatase -
  MY9_RS12950 (MY9_2595) - 2553244..2553384 (+) 141 WP_003226124.1 sporulation histidine kinase inhibitor Sda -
  MY9_RS12960 (MY9_2596) - 2553690..2554421 (-) 732 WP_014664678.1 SGNH/GDSL hydrolase family protein -
  MY9_RS12965 (MY9_2597) - 2554854..2555480 (+) 627 WP_014664679.1 TVP38/TMEM64 family protein -
  MY9_RS21205 - 2555627..2555932 (-) 306 Protein_2502 NAD(P)-binding domain-containing protein -
  MY9_RS12975 (MY9_2599) - 2556169..2556891 (+) 723 WP_041521522.1 hypothetical protein -
  MY9_RS12980 (MY9_2600) nucA/comI 2556924..2557334 (-) 411 WP_014664682.1 sporulation-specific Dnase NucB Machinery gene
  MY9_RS12985 (MY9_2601) sigK 2557531..2558259 (+) 729 WP_013308023.1 RNA polymerase sporulation sigma factor SigK -
  MY9_RS12990 (MY9_2602) - 2558310..2560118 (-) 1809 WP_014664684.1 AIPR family protein -
  MY9_RS12995 (MY9_2604) - 2560440..2560802 (+) 363 WP_014664686.1 helix-turn-helix transcriptional regulator -
  MY9_RS13000 (MY9_2605) - 2560850..2561536 (+) 687 WP_014664687.1 hypothetical protein -
  MY9_RS13005 (MY9_2606) - 2561531..2562241 (-) 711 WP_014664688.1 hypothetical protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 15046.04 Da        Isoelectric Point: 4.9203

>NTDB_id=50624 MY9_RS12980 WP_014664682.1 2556924..2557334(-) (nucA/comI) [Bacillus sp. JS]
MKKWMAGLFIAAAVFLCVMVPQQIQGASLYDKVLYFPLSRYPETGDHIRDAIAEGHSEICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ

Nucleotide


Download         Length: 411 bp        

>NTDB_id=50624 MY9_RS12980 WP_014664682.1 2556924..2557334(-) (nucA/comI) [Bacillus sp. JS]
ATGAAAAAATGGATGGCAGGCCTGTTTATTGCTGCAGCAGTTTTTCTTTGTGTAATGGTTCCGCAGCAGATCCAAGGCGC
TTCTTTGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACAGGCGATCATATTAGAGATGCGATTGCAG
AGGGACATTCTGAGATTTGCACCATAGATAGAGATGGAGCAGACAAAAGGCGGGAGGAATCATTAAAGGGTATTCCGACG
AAGCCGGGCTATGATCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGCGCAGGAGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGGGCCGGCTCATGGGTAGGGAATCAAATGAGCAGCTATCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(40-130)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

64.348

84.559

0.544

Multiple sequence alignment