Detailed information NTG0050622

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: SCI_RS04545
• Genome accession: NC_022238
• Coordinates: 919510..920619 (+)
• Length: 369 a.a.
• NCBI ID: WP_020997774.1
• Uniprot ID: U2ZGR2
• Organism: Streptococcus constellatus subsp. pharyngis C1050
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 914510..925619

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SCI_RS04525 (SCI_0893)	-	916410..916748 (+)	339	WP_003069168.1	ATP cone domain-containing protein	-
SCI_RS04530 (SCI_0894)	rpsU	916910..917086 (+)	177	WP_000048054.1	30S ribosomal protein S21	-
SCI_RS04535 (SCI_0895)	mscL	917200..917577 (-)	378	WP_006267895.1	large conductance mechanosensitive channel protein MscL	-
SCI_RS04540 (SCI_0896)	dnaG	917732..919507 (+)	1776	WP_022525636.1	DNA primase	-
SCI_RS04545 (SCI_0897)	rpoS	919510..920619 (+)	1110	WP_020997774.1	RNA polymerase sigma factor RpoD	Regulator
SCI_RS04550 (SCI_0898)	-	920638..920967 (+)	330	WP_003069160.1	metal-sulfur cluster assembly factor	-
SCI_RS04555 (SCI_0899)	brnQ	921110..922438 (+)	1329	WP_006269526.1	branched-chain amino acid transport system II carrier protein	-
SCI_RS04560 (SCI_0900)	ccdA2	922580..923290 (+)	711	WP_006267815.1	thiol-disulfide oxidoreductase-associated membrane protein CcdA2	-
SCI_RS04565 (SCI_0901)	-	923307..923891 (+)	585	WP_020997775.1	redoxin family protein	-
SCI_RS04570 (SCI_0902)	msrB	923904..925013 (+)	1110	WP_006267871.1	peptide-methionine (R)-S-oxide reductase MsrB	-

Sequence

Protein

• Length: 369 a.a.
• Molecular weight: 42266.91 Da
• Isoelectric Point: 4.4765

>NTDB_id=50622 SCI_RS04545 WP_020997774.1 919510..920619(+) (rpoS) [Streptococcus constellatus subsp. pharyngis C1050]
MATKQKEVTTFDVQVAEFIRNHKKTGTATDDEINDQLVIPFTLNADGIEDLLQRIQDAGIAITDKEGNPSERVLNTEEEA
ELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAVLVEQGDLEAKQRLAEANLRLVVSIAKRYVGRGMQFLDL
IQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQIA
ERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRIVLREQLDEVLDTLTDREENVLRLRFG
LDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1110 bp

>NTDB_id=50622 SCI_RS04545 WP_020997774.1 919510..920619(+) (rpoS) [Streptococcus constellatus subsp. pharyngis C1050]
ATGGCTACAAAACAAAAAGAAGTAACAACTTTTGATGTTCAAGTTGCAGAATTTATTCGCAACCATAAAAAAACTGGTAC
AGCAACCGATGATGAGATTAATGATCAATTAGTCATTCCATTTACTTTAAATGCTGATGGTATTGAGGATCTTCTTCAAC
GAATTCAGGACGCAGGGATTGCTATTACGGATAAAGAGGGCAACCCAAGTGAACGGGTTTTAAATACAGAGGAAGAAGCT
GAATTAACAGACGAGGAGTTGCTTGGTAGCAATTCTGCTAAAGTAAACGACCCTGTCCGTATGTATTTAAAGGAAATTGG
TGTTGTTCCGCTGTTGACCAATGAAGAAGAGCAAGAATTAGCTGTCCTCGTGGAACAAGGCGATTTAGAAGCCAAGCAAC
GTTTGGCGGAAGCTAATTTGCGGTTGGTCGTTTCCATCGCTAAGCGCTATGTTGGGCGTGGCATGCAGTTTCTCGACTTG
ATTCAAGAAGGAAATATGGGATTGATGAAAGCTGTTGATAAGTTTGACTATACTAAAGGTTTCAAATTTTCAACATATGC
TACTTGGTGGATTCGTCAAGCGATTACTCGTGCGATTGCTGATCAAGCTCGTACGATTCGGATTCCGGTTCACATGGTTG
AAACGATTAATAAATTAGTGCGGGAACAACGAAATCTTTTACAAGAATTGGGACAAGATCCAACACCAGAGCAAATTGCA
GAGCGGATGGATATGACGCCTGATAAAGTCCGTGAAATTTTGAAGATTGCACAAGAACCTGTTTCTCTTGAAACACCAAT
TGGAGAGGAAGATGATAGTCATTTGGGTGATTTCATTGAGGATGAGGTTATTGAAAATCCAGTTGATTATACAACGCGTA
TCGTTTTGCGTGAGCAATTAGATGAAGTTCTTGATACATTAACAGACCGTGAAGAAAATGTGCTGCGTCTGCGTTTTGGG
CTAGATGATGGGAAAATGCGTACACTGGAAGATGTTGGAAAAGTATTTAACGTAACTCGTGAACGGATTCGACAAATTGA
GGCTAAAGCCCTGCGCAAATTGCGTCATCCAAGTCGTAGCAAACCGCTTCGTGACTTTATTGAGGATTAG

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-85)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (97-129)

• Sigma-70, region 4 (Sigma70_r4) (303-356)

• Sigma-70 region 2 (Sigma70_r2) (135-204)

• Sigma-70 region 3 (Sigma70_r3) (214-290)

3D structure

• AlphaFold DB: U2ZGR2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.416	79.404	0.369