Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   IVB58_RS01780 Genome accession   NZ_CP065051
Coordinates   382212..384440 (-) Length   742 a.a.
NCBI ID   WP_000156639.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 377212..389440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS01760 (IVB58_01745) - 377396..378352 (-) 957 WP_001107916.1 DnaJ C-terminal domain-containing protein -
  IVB58_RS01765 (IVB58_01750) - 378503..379114 (-) 612 WP_001105725.1 LysE family translocator -
  IVB58_RS01770 (IVB58_01755) - 379253..380128 (-) 876 WP_001281765.1 Hsp33 family molecular chaperone HslO -
  IVB58_RS01775 (IVB58_01760) - 380294..382135 (-) 1842 WP_074163934.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  IVB58_RS01780 (IVB58_01765) priA 382212..384440 (-) 2229 WP_000156639.1 primosomal protein N' Machinery gene
  IVB58_RS01785 (IVB58_01770) gspF 384589..385794 (+) 1206 WP_001112089.1 type II secretion system inner membrane protein GspF -
  IVB58_RS01790 (IVB58_01775) gspG 385818..386399 (+) 582 WP_000865310.1 type II secretion system major pseudopilin GspG -
  IVB58_RS01795 (IVB58_01780) - 386665..387009 (+) 345 WP_000643174.1 hypothetical protein -
  IVB58_RS01800 (IVB58_01785) - 387153..387491 (+) 339 WP_000434938.1 tRNA-binding protein -
  IVB58_RS01805 (IVB58_01790) lnt 387493..389052 (-) 1560 WP_001203083.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 742 a.a.        Molecular weight: 83935.81 Da        Isoelectric Point: 8.6581

>NTDB_id=506214 IVB58_RS01780 WP_000156639.1 382212..384440(-) (priA) [Acinetobacter baumannii strain 2016GDAB1]
MTITPKPDSVVYRVRVAVPVHLYDTFDYTLTKAQYERAQVGSRVAISFGRQNLIGIITEKVDPQESFTGHFQLKAISELL
DDEPILDEQVLNLLTWSAQYYQFPIGEVMQTALPALLRQGKPMDVLFHLWKIIPCDNAEALLKRSIKQQDAYQILKLHPA
GTTENILNLSGVETATLKALQKKGLVDCTLEPHDFSPAPVQLAQMPLTLNEDQKKATQHVLNAQHQYQAFLLDGLTGSGK
TEVYLHIMHEVLKQGKQVLVLVPEIGLTPQTISRFKSRFNCDIALLHSGLNDSKRLQAWQQAQTGKASIILGTRSAIYTP
LPRLGLIILDEEHDLSYKQQEGFRYHARDVALYRGHLQGCPVILGSATPSIDSYYLVETGKLTSLQLNQRAGHALLPKMH
LIDLKIVKKQHGISQPLIEQIKNTLARKEQVLIFLNRRGYAPVLVCESCGWQANCPHCDAHFTLHTQPYSYLHCHHCGTV
HRLPDHCPECQQKSLKTLGAGTAKVEEHLQELFPDYDVIRVDRDSTSRVGSWQKIYDRIHQNKPTILLGTQMLAKGHHFP
HVTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGHVYLQTLRPDHPLLTTLIEKDYRAVAKQTLAERKVAL
LPPYRYAVLIRAESKDRDYTLQFLNEAAEQLRQIAGGIVDIWGPIPAPMERKAGRYRAHMVILSADRARLHFYLRQWWAQ
LVHAPRQHQLRLSIDVDPQEFS

Nucleotide


Download         Length: 2229 bp        

>NTDB_id=506214 IVB58_RS01780 WP_000156639.1 382212..384440(-) (priA) [Acinetobacter baumannii strain 2016GDAB1]
ATGACCATAACGCCAAAGCCTGATTCAGTTGTTTATCGTGTGCGTGTTGCCGTACCTGTGCATCTGTACGACACTTTTGA
CTATACACTCACCAAAGCACAATATGAACGGGCTCAAGTAGGTTCACGCGTCGCAATTTCATTTGGACGGCAAAACCTGA
TTGGTATCATTACTGAAAAAGTTGACCCACAAGAATCATTTACAGGTCACTTTCAGCTTAAGGCCATTTCTGAACTTTTA
GATGATGAGCCTATTTTAGATGAACAAGTTTTAAATTTATTGACATGGTCAGCACAATATTACCAATTCCCGATTGGTGA
GGTGATGCAGACTGCTTTACCTGCGTTATTGCGTCAGGGCAAACCCATGGATGTTTTATTTCATCTATGGAAAATCATTC
CATGTGATAATGCCGAAGCTTTATTAAAACGCTCAATCAAACAGCAAGATGCTTATCAAATTTTAAAATTACATCCTGCC
GGAACCACTGAAAATATTCTCAATTTAAGCGGTGTAGAAACTGCAACACTTAAAGCACTGCAAAAGAAAGGTCTCGTAGA
CTGTACGCTTGAGCCTCATGACTTTAGCCCAGCCCCTGTGCAATTGGCGCAAATGCCACTCACGCTCAATGAAGACCAAA
AGAAGGCCACCCAGCACGTCCTTAATGCACAGCATCAATATCAAGCCTTTTTATTAGATGGTTTAACGGGAAGTGGTAAA
ACTGAAGTTTACCTGCACATCATGCACGAAGTGCTAAAGCAAGGTAAGCAAGTACTGGTGTTAGTTCCCGAAATTGGTTT
AACCCCTCAAACCATTTCGCGCTTTAAGTCTCGTTTTAACTGCGACATCGCTTTATTACATTCGGGGTTAAATGACTCTA
AACGCCTACAAGCATGGCAACAAGCACAGACTGGAAAGGCCTCTATTATTTTAGGAACACGTTCAGCCATTTATACCCCG
CTGCCACGTTTAGGCCTTATCATTTTAGATGAAGAACATGACCTTTCTTATAAACAACAAGAAGGTTTCCGTTACCATGC
GCGTGATGTCGCGCTTTATCGGGGCCACTTACAAGGCTGCCCTGTTATTTTAGGTTCGGCGACTCCAAGTATCGACAGTT
ATTACTTAGTAGAAACTGGCAAGTTAACTTCACTGCAACTTAACCAACGTGCAGGCCATGCGCTTTTACCTAAAATGCAT
TTGATTGACCTTAAAATTGTCAAAAAGCAGCATGGTATTAGTCAGCCTTTAATCGAGCAGATTAAAAATACCCTAGCAAG
AAAAGAACAGGTTTTAATCTTTTTAAACCGACGTGGTTATGCACCTGTATTGGTTTGTGAAAGCTGTGGATGGCAAGCGA
ATTGTCCACATTGTGATGCGCATTTTACGTTGCACACTCAGCCTTACTCTTATTTACATTGTCACCACTGCGGCACAGTT
CATCGCTTGCCTGACCACTGCCCTGAGTGTCAGCAGAAGAGTTTAAAAACTTTAGGTGCAGGAACAGCCAAGGTTGAAGA
GCACTTACAAGAGTTATTTCCAGACTATGATGTGATTCGGGTTGACCGTGACAGCACCAGTCGTGTCGGTAGTTGGCAAA
AAATTTATGATCGTATTCATCAAAACAAACCAACAATTTTGCTCGGTACGCAAATGTTGGCAAAGGGTCACCATTTTCCA
CATGTGACCTTGGTTGCCATTTTAGATATTGATGCAGGTTTACTCAGTGTAGACATCCGTGCACCAGAACGTACGGCGCA
ACTGATTGTGCAAGTCGCTGGTCGTGCAGGTCGTGGAGAACATAAAGGTCATGTTTATTTACAAACCTTAAGACCTGATC
ATCCGTTACTTACCACACTCATCGAAAAAGATTATCGCGCGGTTGCCAAACAAACGCTGGCTGAACGTAAAGTAGCTTTG
CTGCCACCTTATCGCTATGCAGTATTGATACGAGCAGAATCCAAAGATCGTGACTATACCTTACAATTTTTAAATGAAGC
TGCCGAGCAACTTCGCCAAATAGCAGGTGGTATTGTTGATATCTGGGGGCCAATTCCAGCACCAATGGAACGTAAAGCGG
GACGTTACCGCGCACATATGGTGATTTTGTCTGCTGACCGCGCTCGTCTGCATTTTTACTTAAGACAATGGTGGGCTCAA
TTGGTTCATGCGCCAAGACAGCATCAACTCAGACTCTCAATTGATGTTGACCCGCAAGAATTTAGTTAG

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(643-738)

Type III restriction enzyme, res subunit (ResIII)

(208-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

97.035

100

0.97