Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   IVB58_RS01270 Genome accession   NZ_CP065051
Coordinates   271980..272306 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain 2016GDAB1     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 266980..277306
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IVB58_RS01245 (IVB58_01235) hemC 267597..268514 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  IVB58_RS01250 (IVB58_01240) - 268519..269286 (+) 768 WP_000897424.1 uroporphyrinogen-III synthase -
  IVB58_RS01255 (IVB58_01245) - 269295..270134 (+) 840 WP_001225228.1 hypothetical protein -
  IVB58_RS01260 (IVB58_01250) - 270144..271337 (+) 1194 WP_000681775.1 membrane protein -
  IVB58_RS01265 (IVB58_01255) - 271345..271785 (+) 441 WP_000661569.1 thioesterase family protein -
  IVB58_RS01270 (IVB58_01260) hns 271980..272306 (+) 327 WP_000801427.1 H-NS histone family protein Regulator
  IVB58_RS01275 (IVB58_01265) gspN 272639..273382 (+) 744 WP_000730343.1 type II secretion system protein N -
  IVB58_RS01280 (IVB58_01270) - 273382..274218 (+) 837 WP_000870024.1 type II secretion system protein N -
  IVB58_RS01285 (IVB58_01275) gspD 274260..276530 (+) 2271 WP_001196430.1 type II secretion system secretin GspD -
  IVB58_RS01290 (IVB58_01280) - 276571..277200 (+) 630 WP_000219967.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=506211 IVB58_RS01270 WP_000801427.1 271980..272306(+) (hns) [Acinetobacter baumannii strain 2016GDAB1]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=506211 IVB58_RS01270 WP_000801427.1 271980..272306(+) (hns) [Acinetobacter baumannii strain 2016GDAB1]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAAGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAAATTGCTGAAAATGTAGGTTTTAGTGTTGAACAGCTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACTGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1