Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I2D83_RS19505 Genome accession   NZ_CP065044
Coordinates   4382045..4383427 (+) Length   460 a.a.
NCBI ID   WP_205947153.1    Uniprot ID   -
Organism   Pectobacterium aroidearum strain L6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4377045..4388427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I2D83_RS19485 (I2D83_19480) prfC 4377336..4378925 (-) 1590 WP_205947151.1 peptide chain release factor 3 -
  I2D83_RS19490 (I2D83_19485) - 4379226..4380143 (+) 918 WP_181845071.1 hypothetical protein -
  I2D83_RS19495 (I2D83_19490) - 4380198..4380893 (-) 696 WP_205947152.1 YtjB family periplasmic protein -
  I2D83_RS19500 (I2D83_19495) serB 4381050..4382027 (+) 978 WP_012773161.1 phosphoserine phosphatase -
  I2D83_RS19505 (I2D83_19500) radA 4382045..4383427 (+) 1383 WP_205947153.1 DNA repair protein RadA Machinery gene
  I2D83_RS19510 (I2D83_19505) nadR 4383559..4384812 (+) 1254 WP_012773159.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  I2D83_RS19515 (I2D83_19510) - 4384809..4385450 (-) 642 WP_194431528.1 5-formyltetrahydrofolate cyclo-ligase -
  I2D83_RS19525 (I2D83_19520) zapA 4385747..4386076 (-) 330 WP_012773157.1 cell division protein ZapA -
  I2D83_RS19530 (I2D83_19525) - 4386269..4386856 (+) 588 WP_194431527.1 YecA family protein -
  I2D83_RS19535 (I2D83_19530) pepP 4386947..4388272 (+) 1326 WP_180778946.1 Xaa-Pro aminopeptidase -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49668.23 Da        Isoelectric Point: 7.4218

>NTDB_id=506183 I2D83_RS19505 WP_205947153.1 4382045..4383427(+) (radA) [Pectobacterium aroidearum strain L6]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRFDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREVSNPSAIFLSRGDEVTSGSSVMVVWEGTRPLLVEIQALVDQ
SMMSNPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKTPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=506183 I2D83_RS19505 WP_205947153.1 4382045..4383427(+) (radA) [Pectobacterium aroidearum strain L6]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGATTACCCGCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAACACCATTACCGAAGTGCGTCTGGCATCGGCGTCAGTATCACGTTTCGACCGCCTCACCGGCTATG
CGGGTGAGAGTGCTGGCGTCAGCCGGGTACAAAAGCTTTCAGAAATCAGCCTTGAAGCCCTGCCCCGTTTTTCTACCGGT
TTTCAGGAGTTTGACCGCGTTTTGGGCGGCGGCGTCGTTCCCGGCAGCGCGATTCTGATCGGCGGTAACCCCGGTGCGGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAATATGAAAACCCTGTACGTCACCGGGGAAGAATCCT
TGCAGCAGGTGGCGATGCGGGCACACCGCCTCAATTTACCGACACAGAATCTCAATATGCTGTCGGAAACCAGCATCGAA
CAGATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGTTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCCCCCGGCAGCGTAGCGCAGGTGCGCGAAACCGCAGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTCG
CCATCGTCATGGTCGGCCACGTCACCAAAGATGGCTCGCTCGCCGGACCGAAAGTATTAGAACACTGCATCGACTGCTCC
GTGTTGCTGGATGGCGATGCCGATTCGCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTTGGTGCCGTTAACGAGCT
GGGTGTATTCGCGATGACGGAGCAAGGACTACGCGAAGTCAGCAATCCATCGGCGATTTTCCTTAGCCGCGGGGACGAAG
TGACGTCCGGCAGTTCCGTTATGGTGGTGTGGGAAGGCACGCGCCCGCTGCTGGTCGAGATTCAGGCGCTGGTGGATCAA
TCGATGATGTCGAACCCGCGCCGCGTGGCGGTCGGGCTGGAGCAAAATCGGTTAGCCATACTGCTAGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCAGATCAGGATGTGTTCGTGAATGTCGTCGGCGGTGTCAAAGTCACCGAAACCAGCGCCG
ACCTCGCGTTGCTATTATCACTGGTTTCCAGCTTCCGCGACCGCCCGCTACCACAGGATCTCGTCATCTTCGGTGAGGTC
GGTCTGGCAGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCACGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAACGCCTGCCAGTATGCAGGTATTCGGCGTGAAAAAGCTGGCCGACGCGC
TGGCGATCTTAGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.696

100

0.487
  radA Streptococcus mitis NCTC 12261

43.421

99.13

0.43
  radA Streptococcus pneumoniae Rx1

43.421

99.13

0.43
  radA Streptococcus pneumoniae D39

43.421

99.13

0.43
  radA Streptococcus pneumoniae R6

43.421

99.13

0.43
  radA Streptococcus pneumoniae TIGR4

43.421

99.13

0.43
  radA Streptococcus mitis SK321

43.421

99.13

0.43