Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | IPQ37_RS04470 | Genome accession | NZ_CP065041 |
| Coordinates | 879507..879767 (+) | Length | 86 a.a. |
| NCBI ID | WP_370466065.1 | Uniprot ID | - |
| Organism | Photobacterium damselae subsp. damselae strain AS-16-0963-3 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 874507..884767
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| IPQ37_RS04460 (IPQ37_04460) | hupB | 876796..877068 (+) | 273 | WP_005298263.1 | nucleoid-associated protein HU-beta | - |
| IPQ37_RS04465 (IPQ37_04465) | ppiD | 877419..879317 (+) | 1899 | WP_237042743.1 | peptidylprolyl isomerase | - |
| IPQ37_RS04470 (IPQ37_04470) | comEA | 879507..879767 (+) | 261 | WP_370466065.1 | ComEA family DNA-binding protein | Machinery gene |
| IPQ37_RS04475 (IPQ37_04475) | - | 879852..880190 (-) | 339 | WP_068947005.1 | DUF1971 domain-containing protein | - |
| IPQ37_RS04480 (IPQ37_04480) | rrtA | 880277..880834 (-) | 558 | WP_005298272.1 | rhombosortase | - |
| IPQ37_RS04485 (IPQ37_04485) | - | 880844..881464 (+) | 621 | WP_005298274.1 | tRNA-uridine aminocarboxypropyltransferase | - |
| IPQ37_RS04490 (IPQ37_04490) | - | 881683..883011 (-) | 1329 | WP_237042744.1 | anti-phage deoxyguanosine triphosphatase | - |
| IPQ37_RS04495 (IPQ37_04495) | yfbR | 883011..883595 (-) | 585 | WP_138241821.1 | 5'-deoxynucleotidase | - |
Sequence
Protein
Download Length: 86 a.a. Molecular weight: 9485.96 Da Isoelectric Point: 5.1351
>NTDB_id=506145 IPQ37_RS04470 WP_370466065.1 879507..879767(+) (comEA) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
MALAMLLTPLAYAAKDKYEDIEIVVNINKANAEELDKLLVGIGPDKAENIIQYRKQNGKFATADDLAKVKGIGPSTVEKN
RDRIEL
Nucleotide
Download Length: 261 bp
>NTDB_id=506145 IPQ37_RS04470 WP_370466065.1 879507..879767(+) (comEA) [Photobacterium damselae subsp. damselae strain AS-16-0963-3]
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGTCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
ATGGCATTAGCAATGCTACTTACCCCGTTAGCTTATGCAGCGAAAGATAAGTACGAAGATATTGAAATTGTTGTCAATAT
TAATAAAGCAAATGCAGAAGAGTTAGATAAGTTACTGGTTGGAATCGGTCCAGATAAGGCTGAAAATATTATCCAATATC
GTAAGCAGAATGGTAAATTTGCGACCGCGGATGATCTTGCTAAGGTAAAAGGCATTGGCCCCTCAACCGTAGAAAAAAAC
CGCGATCGCATTGAACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
54.118 |
98.837 |
0.535 |
| comEA | Vibrio campbellii strain DS40M4 |
53.488 |
100 |
0.535 |
| comEA | Vibrio cholerae C6706 |
57.353 |
79.07 |
0.453 |
| comEA | Vibrio cholerae strain A1552 |
57.353 |
79.07 |
0.453 |
| comEA | Acinetobacter baylyi ADP1 |
57.812 |
74.419 |
0.43 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
56.667 |
69.767 |
0.395 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
55.738 |
70.93 |
0.395 |
| comA | Synechocystis sp. PCC 6803 |
43.421 |
88.372 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comE | Neisseria gonorrhoeae MS11 |
55.932 |
68.605 |
0.384 |
| comEA | Lactococcus lactis subsp. cremoris KW2 |
51.613 |
72.093 |
0.372 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
50 |
72.093 |
0.36 |
| comEA | Bacillus subtilis subsp. subtilis str. 168 |
49.206 |
73.256 |
0.36 |