Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   I6L25_RS07550 Genome accession   NZ_CP077398
Coordinates   1624114..1624749 (-) Length   211 a.a.
NCBI ID   WP_004709127.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1619114..1629749
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS07525 (I6L25_07525) - 1619170..1620150 (-) 981 WP_004709118.1 DNA polymerase III, delta' subunit -
  I6L25_RS07530 (I6L25_07530) kdsB 1620162..1620923 (-) 762 WP_004709120.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  I6L25_RS07535 (I6L25_07535) lpxK 1620933..1621943 (-) 1011 WP_004709122.1 tetraacyldisaccharide 4'-kinase -
  I6L25_RS07540 (I6L25_07540) msbA 1621946..1623673 (-) 1728 WP_004709124.1 lipid A export permease/ATP-binding protein MsbA -
  I6L25_RS07545 (I6L25_07545) - 1623670..1624098 (-) 429 WP_004709125.1 ExbD/TolR family protein -
  I6L25_RS07550 (I6L25_07550) exbB 1624114..1624749 (-) 636 WP_004709127.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  I6L25_RS07555 (I6L25_07555) - 1624799..1625686 (-) 888 WP_004709129.1 ParB/RepB/Spo0J family partition protein -
  I6L25_RS07560 (I6L25_07560) - 1625683..1626465 (-) 783 WP_002050124.1 ParA family protein -
  I6L25_RS07565 (I6L25_07565) rsmG 1626487..1627119 (-) 633 WP_004709131.1 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG -
  I6L25_RS07570 (I6L25_07570) murU 1627207..1627896 (-) 690 WP_004709133.1 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU -
  I6L25_RS07575 (I6L25_07575) - 1627896..1628909 (-) 1014 WP_004709136.1 aminoglycoside phosphotransferase family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23134.98 Da        Isoelectric Point: 6.9795

>NTDB_id=506101 I6L25_RS07550 WP_004709127.1 1624114..1624749(-) (exbB) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MWELVKAGGWLMLPLILCSILTVAISIERFIRLRRSQVLPKALMSDGSADISHIITNLEQDTNASSTALGNILKAGFEHQ
EHGEQFARAQMEAMASQEISYLEKNINFLGTLSAIAPLLGLLGTVVGIIESFLVIDFGSAGSPSLMIPGISKALITTAVG
MLIAIPALISYRYFQRVVQNYIAELEQQSTLFHASLFYKRSSVVQEHRRVG

Nucleotide


Download         Length: 636 bp        

>NTDB_id=506101 I6L25_RS07550 WP_004709127.1 1624114..1624749(-) (exbB) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGTGGGAACTTGTGAAAGCGGGCGGCTGGTTAATGCTGCCTTTAATTTTGTGTTCAATTTTAACGGTCGCTATTAGTAT
TGAACGTTTTATACGTTTGAGACGTTCACAAGTTTTGCCTAAAGCACTGATGAGTGATGGTAGTGCAGATATTTCTCATA
TCATCACAAATTTGGAGCAAGATACTAATGCCTCAAGTACAGCATTAGGAAATATTCTAAAAGCTGGTTTTGAGCATCAG
GAGCATGGAGAGCAATTTGCTCGGGCTCAAATGGAAGCAATGGCTTCTCAAGAAATTTCTTATTTAGAAAAAAATATTAA
CTTCTTGGGAACTTTAAGTGCTATAGCACCTTTGCTTGGGTTACTTGGAACAGTTGTAGGGATTATTGAGTCTTTTCTCG
TGATTGATTTTGGTTCGGCAGGTAGTCCAAGCTTAATGATTCCTGGTATTTCAAAGGCCTTGATCACGACAGCGGTTGGA
ATGCTCATTGCAATTCCTGCACTTATTTCTTATCGTTATTTTCAGAGAGTGGTGCAAAATTACATTGCGGAGTTAGAGCA
ACAATCTACACTCTTTCATGCATCATTGTTTTATAAACGTTCTTCTGTTGTGCAAGAACATCGCCGTGTTGGTTGA

Domains

Predicted by InterProScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-186)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

41.981

100

0.422