Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   I1A55_RS11315 Genome accession   NZ_CP065040
Coordinates   2224422..2224757 (+) Length   111 a.a.
NCBI ID   WP_017357978.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba1449     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2219422..2229757
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS11295 gcvT 2219898..2220995 (-) 1098 WP_017367586.1 glycine cleavage system aminomethyltransferase GcvT -
  I1A55_RS11300 - 2221557..2223227 (+) 1671 WP_017367587.1 DEAD/DEAH box helicase -
  I1A55_RS11305 - 2223242..2224039 (+) 798 WP_017367588.1 YqhG family protein -
  I1A55_RS11310 - 2224224..2224388 (+) 165 WP_008342197.1 anti-repressor SinI family protein -
  I1A55_RS11315 sinR 2224422..2224757 (+) 336 WP_017357978.1 transcriptional regulator SinR Regulator
  I1A55_RS11320 tasA 2224825..2225625 (-) 801 WP_008342195.1 biofilm matrix protein TasA -
  I1A55_RS11325 sipW 2225684..2226256 (-) 573 WP_017357979.1 signal peptidase I SipW -
  I1A55_RS11330 tapA 2226307..2226834 (-) 528 WP_017367589.1 amyloid fiber anchoring/assembly protein TapA -
  I1A55_RS11335 - 2227087..2227413 (+) 327 WP_017367590.1 DUF3889 domain-containing protein -
  I1A55_RS11340 - 2227449..2227637 (-) 189 WP_017367591.1 YqzE family protein -
  I1A55_RS11345 - 2227698..2228081 (-) 384 WP_017357982.1 competence type IV pilus minor pilin ComGG -
  I1A55_RS11350 comGF 2228078..2228575 (-) 498 WP_017367592.1 competence type IV pilus minor pilin ComGF -
  I1A55_RS11355 comGE 2228517..2228831 (-) 315 WP_017367593.1 competence type IV pilus minor pilin ComGE -
  I1A55_RS11360 comGD 2228815..2229261 (-) 447 WP_017367594.1 competence type IV pilus minor pilin ComGD -
  I1A55_RS11365 comGC 2229254..2229547 (-) 294 WP_008342186.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12936.47 Da        Isoelectric Point: 4.8062

>NTDB_id=506100 I1A55_RS11315 WP_017357978.1 2224422..2224757(+) (sinR) [Bacillus altitudinis strain Ba1449]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNENDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=506100 I1A55_RS11315 WP_017357978.1 2224422..2224757(+) (sinR) [Bacillus altitudinis strain Ba1449]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGTTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTAAACGAAAATGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

92.793

100

0.928