Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   MY9_RS12205 Genome accession   NC_017743
Coordinates   2427108..2428838 (-) Length   576 a.a.
NCBI ID   WP_014664556.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2422108..2433838
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS12165 (MY9_2438) - 2422108..2422404 (-) 297 WP_014664550.1 hypothetical protein -
  MY9_RS21605 (MY9_2439) - 2422708..2422842 (+) 135 WP_014664551.1 hypothetical protein -
  MY9_RS12175 (MY9_2440) - 2422915..2424033 (+) 1119 WP_041521374.1 NADH-dependent flavin oxidoreductase -
  MY9_RS12185 (MY9_2442) - 2424249..2424428 (-) 180 WP_014664554.1 hypothetical protein -
  MY9_RS12190 (MY9_2443) spo0A 2424574..2425377 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  MY9_RS12200 (MY9_2444) spoIVB 2425653..2426933 (-) 1281 WP_014664555.1 SpoIVB peptidase -
  MY9_RS12205 (MY9_2445) recN 2427108..2428838 (-) 1731 WP_014664556.1 DNA repair protein RecN Machinery gene
  MY9_RS12210 (MY9_2446) argR 2428875..2429324 (-) 450 WP_003230265.1 arginine repressor ArgR -
  MY9_RS12215 (MY9_2447) - 2429421..2430266 (-) 846 WP_014664557.1 TlyA family RNA methyltransferase -
  MY9_RS12220 (MY9_2448) dxs 2430263..2432164 (-) 1902 WP_041521375.1 1-deoxy-D-xylulose-5-phosphate synthase -
  MY9_RS12225 (MY9_2450) - 2432340..2433230 (-) 891 WP_014664560.1 polyprenyl synthetase family protein -
  MY9_RS12230 (MY9_2451) - 2433220..2433474 (-) 255 WP_003226409.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64607.44 Da        Isoelectric Point: 4.7370

>NTDB_id=50610 MY9_RS12205 WP_014664556.1 2427108..2428838(-) (recN) [Bacillus sp. JS]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGEAKAELEGLFLLESGHPVLGVC
AEQGIDVSDEMIVMRRDISTSGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKLEINEDEQLQEERQQISNFEKIYESLQNAYNALRSE
QSGLDWVGMASAQLEDISDINEPLKKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNYIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKKELDSVGKDVAVEAANVSQIRKTWAKKLADEIHRELKSLYMEKSTFDTEFKI
RQASRNEEAPVVNGQPVQLTEQGIDLVKFLISTNTGEPLKSLSKVASGGELSRVMLAIKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSIGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLSKQEKIVEIGRMIAGVEVTDLTKR
HAKELLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=50610 MY9_RS12205 WP_014664556.1 2427108..2428838(-) (recN) [Bacillus sp. JS]
TTGTTAGCTGAACTATCGATTAAAAACTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCTCTTTTAGTCGGAGGCCGCGGATCATCTGAAT
TTGTTAGATATGGAGAAGCGAAAGCAGAACTTGAAGGGCTGTTTCTTTTGGAGAGCGGCCATCCCGTTTTAGGCGTATGC
GCTGAGCAGGGAATCGACGTTTCAGACGAAATGATCGTCATGAGAAGAGATATCAGCACGAGCGGGAAAAGCGTTTGCCG
TGTCAATGGCAAGCTTGTCACGATTGCCTCGCTAAGAGAGATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAAGACGAAAATCATCTCCAGCTCTTGGACAAGTTTGCCGGAGCCGAAGTGGAAAGCGCGCTCCAA
GCGTATCAGGAAGGGTACCAGCGGTATATGAAGCTGCTCAAAAAGCTTAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCATCGCCTTGATCTCATTCAATTTCAGCTCGAAGAAATCGAATCAGCAAAGCTTGAGATCAACGAAGATGAACAGCTTC
AAGAAGAGCGTCAGCAAATTTCAAACTTTGAGAAGATATATGAATCGCTGCAAAATGCATATAATGCGCTTCGCAGTGAA
CAGAGCGGATTGGACTGGGTCGGAATGGCATCAGCCCAGCTTGAAGATATATCTGATATTAACGAACCGCTGAAAAAACT
GTCTGAGAGTGTTTCGAACTCCTACTATCTGCTTGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGATCCGGAACGCCTGAACTATATTGAGACGCGGCTCAATGAAATCAAACAGCTGAAACGAAAATACGGTGCCACTGTC
GAGGACATTTTGGAATATGCTTCTAAAATTGAAGAAGAAATTGACCAAATTGAAAACAGGGACAGCCACCTACAAAGCCT
GAAAAAGGAGCTTGACTCCGTTGGCAAGGATGTCGCAGTGGAAGCGGCAAATGTTTCTCAAATCCGGAAAACATGGGCGA
AAAAACTGGCTGATGAGATTCATCGGGAATTAAAAAGCCTGTACATGGAAAAATCAACGTTTGATACGGAATTCAAAATC
AGACAAGCGTCACGCAATGAAGAGGCACCGGTTGTAAACGGCCAGCCTGTTCAGCTGACTGAACAAGGGATCGATCTGGT
GAAGTTTTTAATTTCAACCAATACAGGCGAGCCGCTGAAATCTCTTTCGAAAGTCGCTTCAGGTGGAGAGCTGTCACGGG
TGATGCTTGCCATAAAAAGCATTTTTTCCTCACAGCAGGATGTGACATCGATCATTTTTGATGAGGTTGATACCGGTGTA
AGCGGAAGGGTCGCACAGGCAATCGCTGAGAAGATCCATAAAGTGTCAATAGGATCACAAGTGCTTTGTATTACACACTT
GCCTCAGGTGGCTGCCATGGCCGATACGCATCTTTATATTGCGAAGGAGTTAAAAGACGGCAGAACGACGACACGTGTCA
AGCCGCTTTCTAAGCAGGAAAAAATAGTGGAAATCGGACGCATGATTGCAGGTGTTGAGGTAACCGATTTAACGAAACGC
CATGCGAAAGAACTTTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment