Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   I1A55_RS10160 Genome accession   NZ_CP065040
Coordinates   2014402..2015037 (+) Length   211 a.a.
NCBI ID   WP_035391682.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba1449     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2009402..2020037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS10120 - 2009573..2010691 (+) 1119 WP_025207530.1 NADH-dependent flavin oxidoreductase -
  I1A55_RS10125 - 2010743..2011249 (-) 507 WP_008344623.1 PTS glucose transporter subunit IIA -
  I1A55_RS10130 - 2011418..2011837 (+) 420 WP_007500867.1 Hsp20/alpha crystallin family protein -
  I1A55_RS10135 - 2011859..2012302 (-) 444 WP_206113935.1 YppG family protein -
  I1A55_RS10140 - 2012411..2012791 (-) 381 WP_225310452.1 YppE family protein -
  I1A55_RS10145 - 2012841..2013074 (-) 234 WP_231131595.1 DUF5446 family protein -
  I1A55_RS10150 sspM 2013271..2013375 (+) 105 WP_017359731.1 acid-soluble spore protein SspM -
  I1A55_RS10155 - 2013399..2014355 (-) 957 WP_017359732.1 DUF2515 domain-containing protein -
  I1A55_RS10160 recU 2014402..2015037 (+) 636 WP_035391682.1 Holliday junction resolvase RecU Machinery gene
  I1A55_RS10165 - 2015057..2017744 (+) 2688 WP_206113937.1 PBP1A family penicillin-binding protein -
  I1A55_RS10170 - 2017780..2018289 (-) 510 WP_017367488.1 YpoC family protein -
  I1A55_RS10175 nth 2018286..2018948 (-) 663 WP_008344602.1 endonuclease III -
  I1A55_RS10180 - 2018966..2019670 (-) 705 WP_017367489.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24323.61 Da        Isoelectric Point: 9.6582

>NTDB_id=506097 I1A55_RS10160 WP_035391682.1 2014402..2015037(+) (recU) [Bacillus altitudinis strain Ba1449]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESKHHLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=506097 I1A55_RS10160 WP_035391682.1 2014402..2015037(+) (recU) [Bacillus altitudinis strain Ba1449]
ATGATTCGGTATCCTAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCATC
TTATAGTAACCGTGGGATGACGCTTGAAGCTGACTTAAATGAAACGAACCAGTACTATTTGGTCAACGGGATTGCAGTCA
TTCATAAAAAGCCTACCCCTGTTCAAATTGTCAATGTGGATTATCCAAAAAGAAGCGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCCTCCACAACAGACTACAACGGGGTATACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTTGTTATTATATCCGCATTTGGTTCCGTTTATTATTTGTCCGCTTCTGACCTCTTCTTCTTTTGGGAGCGGCAACAG
CAAAACGGCCGTAAATCCATTAGCAAAGATGAATTAATGGAAGCAGGCCACCTCATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCATCATTTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

95.735

0.697