Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   I1A55_RS08710 Genome accession   NZ_CP065040
Coordinates   1730707..1731087 (+) Length   126 a.a.
NCBI ID   WP_224559893.1    Uniprot ID   -
Organism   Bacillus altitudinis strain Ba1449     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1725707..1736087
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS08700 - 1727430..1728338 (+) 909 WP_008343827.1 serine protease -
  I1A55_RS08705 - 1728485..1730479 (+) 1995 WP_017367322.1 glycosyltransferase family 39 protein -
  I1A55_RS08710 nucA/comI 1730707..1731087 (+) 381 WP_224559893.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  I1A55_RS08715 - 1731231..1732079 (+) 849 WP_017367323.1 STAS domain-containing protein -
  I1A55_RS08720 - 1732112..1732654 (-) 543 WP_206114335.1 IseA DL-endopeptidase inhibitor family protein -
  I1A55_RS08725 - 1732951..1733394 (+) 444 WP_008343821.1 hypothetical protein -
  I1A55_RS08730 lexA 1733442..1734062 (-) 621 WP_007499350.1 transcriptional repressor LexA -
  I1A55_RS08735 yneA 1734222..1734533 (+) 312 WP_007499348.1 cell division suppressor protein YneA -
  I1A55_RS08740 - 1734551..1735198 (+) 648 WP_017359583.1 recombinase family protein -
  I1A55_RS08745 - 1735268..1735498 (+) 231 WP_024719088.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13758.38 Da        Isoelectric Point: 7.9019

>NTDB_id=506096 I1A55_RS08710 WP_224559893.1 1730707..1731087(+) (nucA/comI) [Bacillus altitudinis strain Ba1449]
MGALLGGFGEDRSAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWVGHQISGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=506096 I1A55_RS08710 WP_224559893.1 1730707..1731087(+) (nucA/comI) [Bacillus altitudinis strain Ba1449]
ATGGGTGCGTTATTAGGTGGTTTTGGAGAGGATCGTTCAGCAAAAGGGGCAGATCGTTATGATCATGTGATTCAATTTCC
TAAGGAACGGTATCCTGAAACAGGCAGTCATATTCAAGAAGCTATTCGAAAAGGACACTCAGACGTGTGTACCATTGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCCACAAAACCTGGTTTTGACCGGGATGAATGGCCG
ATGGCGGTGTGTCTTGAAGGAGGAAAGGGGGCGAGCGTTCAATATGTCAGTCCATCAGATAATAGAGGCGCTGGTTCATG
GGTCGGGCATCAAATCAGTGGGTATCCTGACGGGAAACGAATTTTATTTATTGTCAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.824

94.444

0.556