Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I1A55_RS07035 Genome accession   NZ_CP065040
Coordinates   1386798..1387076 (+) Length   92 a.a.
NCBI ID   WP_008345129.1    Uniprot ID   A0AAD0MKH3
Organism   Bacillus altitudinis strain Ba1449     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1381798..1392076
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS07015 - 1382023..1383435 (+) 1413 WP_234717146.1 RES domain-containing protein -
  I1A55_RS07020 - 1383970..1385202 (-) 1233 WP_008345134.1 aminopeptidase -
  I1A55_RS07025 - 1385308..1385439 (-) 132 WP_003210922.1 protein YkpC -
  I1A55_RS07030 mreBH 1385514..1386521 (-) 1008 WP_017359401.1 rod-share determining protein MreBH -
  I1A55_RS07035 abrB 1386798..1387076 (+) 279 WP_008345129.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I1A55_RS07040 - 1387221..1388510 (+) 1290 WP_008345127.1 ATP-binding protein -
  I1A55_RS07045 - 1388538..1389380 (+) 843 WP_017367171.1 gamma-glutamylcyclotransferase -
  I1A55_RS07050 - 1389418..1390086 (+) 669 WP_008345123.1 TrkA family potassium uptake protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10320.00 Da        Isoelectric Point: 4.5447

>NTDB_id=506091 I1A55_RS07035 WP_008345129.1 1386798..1387076(+) (abrB) [Bacillus altitudinis strain Ba1449]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGEKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=506091 I1A55_RS07035 WP_008345129.1 1386798..1387076(+) (abrB) [Bacillus altitudinis strain Ba1449]
TTGAAATCTATCGGAGTTGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGAGAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTCT
GCCTGATGACTGGTGAGATTACTTCTGAGAACCACGAGTATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGCTAAAAGAGCTTCAAGAAGCCCTTCAGCAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

55.435

100

0.554