Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   I6L25_RS01615 Genome accession   NZ_CP077398
Coordinates   356812..358200 (-) Length   462 a.a.
NCBI ID   WP_004707421.1    Uniprot ID   A0AA36KAH4
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 351812..363200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS01590 (I6L25_01590) fdhD 352240..353031 (+) 792 WP_004707413.1 formate dehydrogenase accessory sulfurtransferase FdhD -
  I6L25_RS01595 (I6L25_01595) - 353151..353543 (+) 393 WP_004707416.1 YkvA family protein -
  I6L25_RS01600 (I6L25_01600) - 353647..354714 (+) 1068 WP_004707417.1 4-phosphoerythronate dehydrogenase -
  I6L25_RS01605 (I6L25_01605) epmA 354711..355685 (+) 975 WP_004707419.1 EF-P lysine aminoacylase EpmA -
  I6L25_RS01610 (I6L25_01610) - 355743..356729 (-) 987 WP_004707420.1 Tim44 domain-containing protein -
  I6L25_RS01615 (I6L25_01615) radA/sms 356812..358200 (-) 1389 WP_004707421.1 DNA repair protein RadA Machinery gene
  I6L25_RS01620 (I6L25_01620) - 358376..359794 (+) 1419 WP_002048578.1 amino acid permease -
  I6L25_RS01625 (I6L25_01625) - 360095..361501 (+) 1407 WP_004707422.1 amino acid permease -
  I6L25_RS01630 (I6L25_01630) lptM 361642..361866 (+) 225 WP_002048546.1 LPS translocon maturation chaperone LptM -
  I6L25_RS01635 (I6L25_01635) lysA 361889..363139 (+) 1251 WP_004707425.1 diaminopimelate decarboxylase -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 49697.11 Da        Isoelectric Point: 7.4191

>NTDB_id=506083 I6L25_RS01615 WP_004707421.1 356812..358200(-) (radA/sms) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MSKVKTVYRCEQCGADHPKWAGQCSECGEWNSLTEVKLEPTTAHRARPKIGGYAGQVANITTLNKVSVSHETRLPTGISE
FDRVLGGGLVTGSVVLIGGDPGIGKSTILLQTATHMASAKSSALYITGEESLSQVALRAQRLDLPTDQLKVMAETCVERI
CEVLEQERPVVAILDSIQTLYTETLQSAPGGVSQIRESAALLTRYAKNSGTALFIVGHVTKEGALAGPRVLEHMVDCVLY
FEGQSDSRYRMIRAVKNRFGAVNELGVFGMTDKGLREVANPSAIFLSRYDEAIPGSIVMISREGTRPLLVEVQALVDDAQ
GQPRRVALGLEQNRLNMLLAVMHRHGGVQTTGQDVYVNIVGGLKITETGSDLAVLLACASSLRTKALPQQLAVFGEVGLS
GEIRPVPNGQERLKEAAKHGFKYVILPRGNAPQKAIPGVQVIAVARLHEALTEAMQLSDELT

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=506083 I6L25_RS01615 WP_004707421.1 356812..358200(-) (radA/sms) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGAGCAAAGTCAAAACTGTTTACCGTTGCGAACAATGTGGTGCGGATCATCCTAAATGGGCTGGTCAATGTTCAGAGTG
TGGTGAATGGAATTCTCTGACTGAAGTTAAACTCGAACCTACTACAGCCCATCGCGCTCGTCCTAAAATTGGGGGCTACG
CAGGCCAAGTTGCCAATATAACAACACTAAATAAAGTCTCGGTTTCTCATGAAACCCGCTTACCTACAGGTATTAGCGAG
TTTGACCGCGTACTTGGCGGTGGCTTGGTCACAGGCTCAGTAGTCCTGATTGGTGGTGACCCAGGTATTGGTAAATCGAC
CATTCTTTTACAAACAGCAACCCACATGGCAAGTGCAAAAAGTTCTGCACTTTATATTACGGGTGAAGAATCATTGTCTC
AGGTGGCCTTACGTGCTCAGCGCCTTGACTTGCCTACAGACCAGTTAAAAGTCATGGCTGAAACCTGTGTCGAACGCATT
TGTGAAGTTTTAGAGCAAGAACGCCCTGTGGTAGCAATTTTGGACTCGATTCAAACGCTTTACACAGAAACGCTTCAATC
TGCACCCGGTGGGGTTTCACAAATTCGTGAATCTGCTGCGTTATTAACCCGCTATGCAAAAAATAGTGGCACGGCGTTAT
TTATTGTTGGTCACGTGACCAAAGAAGGTGCACTGGCAGGCCCACGTGTTTTAGAACATATGGTGGACTGTGTGCTTTAT
TTTGAAGGCCAATCAGACTCACGCTATCGTATGATTCGTGCGGTGAAAAACCGTTTTGGTGCAGTCAATGAACTTGGTGT
ATTTGGCATGACCGATAAAGGCTTACGTGAAGTGGCTAACCCTTCTGCTATTTTCTTAAGTCGTTATGACGAAGCCATTC
CCGGTTCAATTGTCATGATTAGCCGTGAAGGAACGCGCCCGCTTTTAGTTGAAGTTCAAGCTTTAGTCGATGATGCTCAA
GGACAACCTAGACGTGTCGCTCTTGGTCTTGAACAAAACCGTTTAAACATGCTGCTTGCTGTAATGCACCGTCATGGGGG
TGTACAAACTACAGGGCAAGACGTTTATGTCAACATTGTCGGTGGTTTAAAAATTACTGAAACAGGTTCTGACTTGGCTG
TTTTACTGGCGTGTGCATCAAGTTTACGTACCAAGGCATTGCCTCAGCAACTTGCAGTTTTTGGTGAAGTTGGTCTTTCA
GGTGAAATCCGACCTGTACCGAATGGACAAGAGCGCTTAAAAGAAGCAGCAAAACATGGCTTTAAATATGTCATTTTACC
TAGAGGCAACGCACCACAAAAAGCGATTCCGGGAGTACAAGTAATTGCTGTGGCACGCTTACATGAAGCCCTTACCGAAG
CGATGCAGCTCAGCGATGAATTGACATAA

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(75-150)

Subunit ChlI of Mg-chelatase (ChlI)

(346-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AA36KAH4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

46.389

98.918

0.459
  radA Streptococcus mitis NCTC 12261

43.478

99.567

0.433
  radA Streptococcus pneumoniae D39

43.107

98.918

0.426
  radA Streptococcus pneumoniae TIGR4

43.107

98.918

0.426
  radA Streptococcus mitis SK321

43.107

98.918

0.426
  radA Streptococcus pneumoniae R6

43.107

98.918

0.426
  radA Streptococcus pneumoniae Rx1

43.107

98.918

0.426