Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimT   Type   Machinery gene
Locus tag   I6L25_RS00405 Genome accession   NZ_CP077398
Coordinates   87995..88510 (-) Length   171 a.a.
NCBI ID   WP_004712040.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain FDAARGOS 1395     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 82995..93510
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L25_RS00380 (I6L25_00380) - 83536..85179 (+) 1644 WP_004712033.1 nitrite/sulfite reductase -
  I6L25_RS00385 (I6L25_00385) - 85172..85657 (+) 486 WP_002051429.1 DUF934 domain-containing protein -
  I6L25_RS00390 (I6L25_00390) - 85736..86089 (+) 354 WP_002051463.1 DMT family transporter -
  I6L25_RS00395 (I6L25_00395) - 86142..86585 (-) 444 WP_002051396.1 VOC family protein -
  I6L25_RS00400 (I6L25_00400) - 86711..87886 (-) 1176 WP_004712038.1 thiolase family protein -
  I6L25_RS00405 (I6L25_00405) fimT 87995..88510 (-) 516 WP_004712040.1 GspH/FimT family pseudopilin Machinery gene
  I6L25_RS00410 (I6L25_00410) omp38 88890..89933 (+) 1044 WP_004712042.1 outer membrane protein Omp38 -
  I6L25_RS00415 (I6L25_00415) - 90061..90219 (-) 159 WP_004712046.1 hypothetical protein -
  I6L25_RS00420 (I6L25_00420) - 90223..91428 (-) 1206 WP_004712047.1 RtcB family protein -
  I6L25_RS00425 (I6L25_00425) - 91706..93166 (-) 1461 WP_002051328.1 amino acid permease -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19424.63 Da        Isoelectric Point: 8.8332

>NTDB_id=506078 I6L25_RS00405 WP_004712040.1 87995..88510(-) (fimT) [Acinetobacter nosocomialis strain FDAARGOS 1395]
MFRSPGFTIVELSITLVILVIMSVIAIPLYHQFMASVELKNTSRVLTIHIQKAKSDAIIKHKNIVLCPSSDQVICNTDWN
KHLISFIDSNRNLQHDLNEELLTSIDLNHTYGSMKLQRFGKKQNSIVFQGSSGLPIESNGSFIYCSYDQLKNFKLVLSKM
GHVRVEELKNC

Nucleotide


Download         Length: 516 bp        

>NTDB_id=506078 I6L25_RS00405 WP_004712040.1 87995..88510(-) (fimT) [Acinetobacter nosocomialis strain FDAARGOS 1395]
ATGTTTAGATCTCCTGGTTTTACTATAGTTGAGCTCTCTATAACCCTCGTAATTCTTGTGATTATGTCAGTTATAGCCAT
TCCTTTATACCATCAATTTATGGCATCTGTAGAATTAAAAAATACTTCGCGTGTACTCACAATTCATATACAAAAAGCCA
AATCGGACGCAATTATTAAGCATAAGAACATTGTTCTGTGTCCAAGTTCAGATCAGGTAATCTGTAATACAGATTGGAAT
AAACACTTAATCAGCTTCATAGATAGTAACCGTAATCTACAGCATGATTTAAATGAAGAATTATTAACCTCTATAGATCT
TAACCATACTTATGGTTCTATGAAATTACAACGTTTTGGTAAAAAACAAAATAGTATTGTTTTTCAAGGAAGCTCGGGAC
TTCCAATCGAGTCTAATGGTAGTTTTATTTACTGTTCTTATGATCAGCTTAAAAATTTTAAATTAGTTCTTAGCAAAATG
GGGCATGTGCGTGTCGAAGAATTAAAAAATTGTTAG

Domains

Predicted by InterProScan.

Type II transport protein GspH (GspH)

(49-151)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimT Acinetobacter baylyi ADP1

43.976

97.076

0.427