Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   I1A55_RS05180 Genome accession   NZ_CP065040
Coordinates   1032397..1032975 (+) Length   192 a.a.
NCBI ID   WP_017366958.1    Uniprot ID   A0A5D4P9G2
Organism   Bacillus altitudinis strain Ba1449     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1027397..1037975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1A55_RS05160 - 1027890..1029251 (-) 1362 WP_370539267.1 globin-coupled sensor protein -
  I1A55_RS05165 - 1029277..1030809 (-) 1533 WP_206114263.1 FAD-dependent oxidoreductase -
  I1A55_RS05170 - 1030952..1031812 (+) 861 WP_017366957.1 SDR family oxidoreductase -
  I1A55_RS05175 - 1031871..1032107 (-) 237 WP_008348804.1 IDEAL domain-containing protein -
  I1A55_RS05180 comK 1032397..1032975 (+) 579 WP_017366958.1 competence protein ComK Regulator
  I1A55_RS05185 - 1033119..1034225 (+) 1107 WP_206114264.1 alanine racemase -
  I1A55_RS05190 - 1034527..1035009 (+) 483 WP_017366960.1 hypothetical protein -
  I1A55_RS05195 - 1035040..1036479 (-) 1440 WP_017366961.1 PLP-dependent aminotransferase family protein -
  I1A55_RS05200 - 1036623..1037792 (+) 1170 WP_017366962.1 MFS transporter -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22348.40 Da        Isoelectric Point: 8.7996

>NTDB_id=506076 I1A55_RS05180 WP_017366958.1 1032397..1032975(+) (comK) [Bacillus altitudinis strain Ba1449]
MSGISETPLDSYVINQTTMAVLPVEEGKRVYSKVIERETSFYVELKPLQIIERSCRFFGSSYAGRKAGTYEVTGISHKPP
IVIDSSNHLYFFPTYSSNRPQCGWISHKYIHIFQESSLGDTVVTFTNEQSVKLDVSYKSFESQVHRTAYLRTKFQDRLDG
GLPKKQEFMLYPKEQQLNLVYDFILRELRNRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=506076 I1A55_RS05180 WP_017366958.1 1032397..1032975(+) (comK) [Bacillus altitudinis strain Ba1449]
GTGTCAGGAATTAGTGAAACACCATTAGATTCATACGTCATTAATCAAACAACAATGGCGGTCCTTCCGGTTGAAGAAGG
AAAACGAGTATATTCAAAAGTGATCGAAAGAGAGACAAGCTTTTACGTTGAATTAAAGCCGCTGCAAATTATAGAACGCA
GTTGCAGGTTCTTTGGCTCAAGCTATGCAGGCAGAAAAGCGGGAACATATGAAGTAACAGGTATTTCCCACAAGCCTCCC
ATCGTGATTGACTCATCCAATCATCTGTATTTCTTCCCAACCTATTCATCCAACCGCCCTCAATGCGGATGGATCTCCCA
CAAATACATTCATATCTTTCAGGAATCATCCCTCGGAGACACGGTTGTTACTTTTACAAATGAGCAATCGGTCAAACTAG
ATGTCTCATATAAGTCATTTGAGAGTCAGGTACACCGAACAGCGTACCTCCGAACGAAATTTCAAGATCGACTTGATGGA
GGTCTTCCTAAGAAACAAGAATTTATGCTGTATCCAAAGGAACAGCAGCTCAACCTTGTGTATGATTTTATCTTAAGAGA
ACTTCGTAATCGTTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5D4P9G2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

61.458

100

0.615