Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   MY9_RS08000 Genome accession   NC_017743
Coordinates   1564346..1564624 (+) Length   92 a.a.
NCBI ID   WP_014663823.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1559346..1569624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS07980 (MY9_1580) - 1560534..1561445 (+) 912 WP_041521322.1 ketopantoate reductase family protein -
  MY9_RS07985 (MY9_1581) - 1561478..1562710 (-) 1233 WP_041521323.1 aminopeptidase -
  MY9_RS07990 (MY9_1582) - 1562821..1562955 (-) 135 WP_003238865.1 protein YkpC -
  MY9_RS07995 (MY9_1583) mreBH 1563056..1564063 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  MY9_RS08000 (MY9_1585) abrB 1564346..1564624 (+) 279 WP_014663823.1 transcriptional regulator AbhA Regulator
  MY9_RS08005 (MY9_1586) kinC 1564815..1566101 (+) 1287 WP_014663824.1 two-component sensor histidine kinase KinC -
  MY9_RS08010 (MY9_1587) - 1566117..1566944 (+) 828 WP_014663825.1 gamma-glutamylcyclotransferase -
  MY9_RS08015 (MY9_1588) ktrC 1567006..1567671 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  MY9_RS08020 (MY9_1589) ade 1567825..1569558 (+) 1734 WP_014663826.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10242.04 Da        Isoelectric Point: 5.8742

>NTDB_id=50602 MY9_RS08000 WP_014663823.1 1564346..1564624(+) (abrB) [Bacillus sp. JS]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKDYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=50602 MY9_RS08000 WP_014663823.1 1564346..1564624(+) (abrB) [Bacillus sp. JS]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTTATGCCGATAGAGTTAAGACGGGCACTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGATTACGGCAACGGCAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment