Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   I6L85_RS10460 Genome accession   NZ_CP077248
Coordinates   2132421..2133203 (-) Length   260 a.a.
NCBI ID   WP_045772603.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2127421..2138203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS10445 (I6L85_10445) purC 2130326..2131033 (-) 708 WP_060971121.1 phosphoribosylaminoimidazolesuccinocarboxamide synthase -
  I6L85_RS10450 (I6L85_10450) - 2131187..2131426 (-) 240 WP_008808067.1 acyl carrier protein -
  I6L85_RS10455 (I6L85_10455) plsX 2131423..2132424 (-) 1002 WP_045772604.1 phosphate acyltransferase PlsX -
  I6L85_RS10460 (I6L85_10460) recO 2132421..2133203 (-) 783 WP_045772603.1 DNA repair protein RecO Machinery gene
  I6L85_RS10465 (I6L85_10465) - 2133181..2134368 (-) 1188 WP_111723083.1 pyridoxal phosphate-dependent aminotransferase -
  I6L85_RS10470 (I6L85_10470) - 2134493..2134783 (-) 291 WP_011999582.1 Veg family protein -
  I6L85_RS10475 (I6L85_10475) dnaB 2134785..2136140 (-) 1356 WP_008808062.1 replicative DNA helicase -
  I6L85_RS10480 (I6L85_10480) rplI 2136167..2136619 (-) 453 WP_011999581.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 260 a.a.        Molecular weight: 29978.29 Da        Isoelectric Point: 5.1557

>NTDB_id=505958 I6L85_RS10460 WP_045772603.1 2132421..2133203(-) (recO) [Streptococcus gordonii strain FDAARGOS 1455]
MMQSITSKALVLYNRNFREDDKLVKIFTEQAGKRMFFVKHATNSKLSPVIQPLTLANLLMKVNDDGLSYIQDYQDVQPFT
RINSDLFIMAYATYVAALADASIPDSQPDAALFAFLTKTLELMEEGLDHEILTNIFEVQILSRFGVSLNFHECVFCHRTG
LPFDFSFKFSGVLCPDHYHEDDRRCHLHPNIPFLLDQFQAVEYSTLETISLKAEIKQQLREFIDQIYDDYVGIHLKSKKF
IDSLGDWGSILKDKENKESI

Nucleotide


Download         Length: 783 bp        

>NTDB_id=505958 I6L85_RS10460 WP_045772603.1 2132421..2133203(-) (recO) [Streptococcus gordonii strain FDAARGOS 1455]
ATGATGCAGTCCATCACGAGTAAAGCGCTAGTACTCTATAATCGAAACTTTCGTGAAGACGACAAATTAGTAAAAATATT
TACAGAACAGGCTGGCAAACGTATGTTTTTCGTGAAACATGCCACCAACTCTAAGCTGAGTCCTGTTATTCAGCCCCTTA
CCTTGGCAAATTTGCTTATGAAGGTGAATGATGATGGTCTGAGTTATATTCAAGATTACCAAGATGTCCAGCCTTTCACT
CGGATTAATAGTGATTTGTTCATCATGGCCTATGCGACCTATGTCGCTGCCTTGGCAGACGCTAGTATTCCGGACAGTCA
ACCAGATGCTGCTCTTTTTGCCTTTCTGACAAAAACCTTGGAGCTAATGGAAGAAGGTTTAGACCATGAGATTTTGACAA
ATATTTTTGAAGTTCAGATTTTGTCCCGTTTTGGTGTTTCTCTGAATTTCCACGAATGTGTCTTTTGTCATCGAACTGGA
CTACCTTTTGATTTTTCCTTTAAATTCAGTGGTGTCCTTTGTCCAGATCACTATCATGAGGACGATCGTCGCTGTCATCT
CCATCCCAATATCCCATTCTTACTTGATCAATTTCAGGCAGTAGAATATAGCACTCTGGAAACTATTTCACTAAAAGCAG
AAATTAAGCAACAACTACGCGAATTTATAGATCAAATTTACGACGATTATGTTGGAATTCATTTGAAATCAAAGAAATTC
ATTGATTCTCTAGGAGACTGGGGAAGTATTTTAAAAGATAAAGAAAATAAGGAGTCAATATGA

Domains

Predicted by InterProScan.

Recombination protein O N terminal (RecO_N)

(2-79)

Recombination protein O C terminal (RecO_C)

(84-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Streptococcus pneumoniae R6

74.51

98.077

0.731