Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   I6L85_RS07260 Genome accession   NZ_CP077248
Coordinates   1465568..1467226 (-) Length   552 a.a.
NCBI ID   WP_111723436.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1460568..1472226
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS07230 (I6L85_07230) - 1461535..1461750 (-) 216 WP_061411030.1 YozE family protein -
  I6L85_RS07235 (I6L85_07235) - 1461861..1462553 (-) 693 WP_008809077.1 phosphoglycerate mutase -
  I6L85_RS07240 (I6L85_07240) perR 1462715..1463185 (-) 471 WP_045634688.1 peroxide-responsive transcriptional repressor PerR -
  I6L85_RS07245 (I6L85_07245) - 1463485..1463760 (-) 276 WP_008809079.1 HU family DNA-binding protein -
  I6L85_RS07250 (I6L85_07250) - 1463905..1464738 (-) 834 WP_111723438.1 DegV family protein -
  I6L85_RS07255 (I6L85_07255) - 1464802..1465530 (-) 729 WP_111723437.1 metallophosphoesterase family protein -
  I6L85_RS07260 (I6L85_07260) recN 1465568..1467226 (-) 1659 WP_111723436.1 DNA repair protein RecN Machinery gene
  I6L85_RS07265 (I6L85_07265) - 1467234..1467665 (-) 432 WP_008809083.1 arginine repressor -
  I6L85_RS07270 (I6L85_07270) - 1467658..1468473 (-) 816 WP_111723435.1 TlyA family RNA methyltransferase -
  I6L85_RS07275 (I6L85_07275) - 1468466..1469341 (-) 876 WP_111723434.1 polyprenyl synthetase family protein -
  I6L85_RS07280 (I6L85_07280) - 1469338..1469550 (-) 213 WP_008809086.1 exodeoxyribonuclease VII small subunit -
  I6L85_RS07285 (I6L85_07285) xseA 1469528..1470868 (-) 1341 WP_111723433.1 exodeoxyribonuclease VII large subunit -
  I6L85_RS07290 (I6L85_07290) - 1471023..1471865 (-) 843 WP_111723432.1 NAD(P)H-hydrate dehydratase -

Sequence

Protein


Download         Length: 552 a.a.        Molecular weight: 62301.32 Da        Isoelectric Point: 4.5770

>NTDB_id=505936 I6L85_RS07260 WP_111723436.1 1465568..1467226(-) (recN) [Streptococcus gordonii strain FDAARGOS 1455]
MLLEISIKNFAIIEEISLHFDQGMTVLTGETGAGKSIIIDAMNMMLGSRATTDVIRHGATKAEIEGLFSLENSSAIEAIF
EEQGLELTDELIIRREILQNGRSVSRVNGQLVNLSVLKAIGQHLVDIHGQHDQEELMRPQLHIAMLDEFGDEDFVALKAF
YQETFDHYRQLRKQVLTLHKNQEEHKARIEMLEFQMAEIDSASLKTGEDKALHQERDRLLNHKLIADTLTNAYAMLDNED
FSSLANVRSAMNDMESIEEYDPTYKELSSSLSETYYVLEDVTKRLEDILDGLDFDGNRLMQVESRLDLINSITRKYGGQV
DDVLEYFSQISKEYQLLTGSHSSSEDLEAELKDLEKRLVNLAGQLSQARHELAKQLESEIKQELQDLYMEKANFQVQFNK
SKFNREGNEQVEFYISTNPGESFKPLVKVASGGELSRLMLAIKSAFSRKEGKTSIVFDEVDTGVSGRVAQAIAQKIHKIG
SNGQVLAISHLPQVIAIADNQFFIEKISDENSTVSTVRLLDFDERVEEIAKMLAGENVTEAALSQARELLKK

Nucleotide


Download         Length: 1659 bp        

>NTDB_id=505936 I6L85_RS07260 WP_111723436.1 1465568..1467226(-) (recN) [Streptococcus gordonii strain FDAARGOS 1455]
ATGTTATTAGAAATTTCTATAAAAAACTTTGCTATTATTGAAGAAATCTCTCTTCATTTTGACCAAGGGATGACAGTCCT
GACCGGCGAAACTGGGGCAGGAAAGTCTATCATTATCGATGCTATGAATATGATGCTGGGTAGCCGTGCTACTACAGATG
TTATTCGTCATGGAGCTACTAAGGCAGAAATTGAAGGATTGTTTTCATTGGAAAATAGCTCAGCTATAGAAGCAATTTTT
GAAGAGCAGGGCTTAGAATTGACTGATGAGCTTATTATCCGCCGAGAAATTCTGCAAAATGGTCGCAGTGTCAGCCGGGT
TAATGGACAGTTAGTTAATTTATCAGTTTTGAAAGCTATTGGTCAACATTTAGTAGATATTCATGGTCAACACGATCAGG
AAGAATTAATGCGTCCTCAGCTTCATATAGCCATGTTGGATGAGTTTGGAGATGAGGATTTCGTTGCCTTGAAAGCTTTC
TATCAAGAAACCTTTGATCACTATCGTCAGCTTCGCAAACAGGTTCTGACCTTGCATAAAAATCAAGAGGAGCATAAGGC
TCGCATTGAAATGCTAGAATTTCAGATGGCTGAAATTGATAGTGCTTCCTTGAAAACTGGTGAAGACAAAGCTCTCCACC
AAGAACGTGATCGCTTACTCAATCACAAGCTGATTGCTGATACCTTGACCAATGCATACGCTATGTTGGATAACGAGGAT
TTTTCTAGTTTGGCTAATGTGCGTTCAGCTATGAACGATATGGAGTCTATTGAAGAATATGACCCAACATACAAGGAATT
ATCTTCTAGTCTTTCTGAGACCTATTACGTTCTGGAAGATGTGACTAAACGGTTGGAAGACATTTTAGATGGACTGGATT
TTGATGGCAACCGCCTGATGCAGGTTGAAAGTCGTTTAGATTTGATTAACAGTATCACTCGTAAATATGGTGGCCAAGTA
GATGATGTTTTAGAATATTTTTCACAAATATCGAAAGAGTACCAGCTACTGACAGGCAGTCACTCATCTTCTGAAGATTT
AGAGGCAGAACTTAAAGATTTAGAAAAGCGTTTGGTGAATTTAGCTGGACAGCTTAGCCAAGCAAGACATGAGTTGGCTA
AACAACTTGAGTCGGAGATTAAGCAGGAACTGCAAGATCTCTATATGGAAAAAGCGAATTTTCAAGTTCAATTTAACAAG
AGCAAGTTTAACCGTGAAGGAAATGAGCAAGTAGAATTTTATATTTCAACCAATCCTGGAGAAAGCTTTAAGCCTTTAGT
TAAGGTTGCATCAGGTGGGGAATTATCTCGTCTGATGCTTGCAATTAAATCAGCTTTCTCTCGGAAAGAAGGAAAGACTA
GTATAGTCTTTGACGAAGTTGATACAGGAGTTTCGGGTCGGGTAGCCCAAGCTATCGCACAAAAAATCCATAAGATTGGC
AGTAATGGTCAGGTTTTAGCAATCTCTCATCTGCCACAAGTCATTGCCATTGCAGACAACCAATTCTTTATTGAAAAAAT
TTCTGATGAAAATTCTACTGTTTCAACTGTTCGTCTCTTGGACTTCGATGAGCGAGTGGAAGAAATTGCTAAGATGTTAG
CTGGTGAAAATGTAACAGAAGCTGCTTTGAGCCAGGCGCGTGAATTATTAAAGAAATAG

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-507)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

45.614

100

0.471