Detailed information NTG0505921

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: F131LOC_RS02350
• Genome accession: NZ_CP065030
• Coordinates: 517258..518640 (-)
• Length: 460 a.a.
• NCBI ID: WP_103972311.1
• Uniprot ID: -
• Organism: Pectobacterium versatile strain F131
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 512258..523640

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F131LOC_RS02320 (F131LOC_002320)	pepP	512434..513759 (-)	1326	WP_039493867.1	Xaa-Pro aminopeptidase	-
F131LOC_RS02325 (F131LOC_002325)	-	513834..514421 (-)	588	WP_103861511.1	YecA family protein	-
F131LOC_RS02330 (F131LOC_002330)	zapA	514614..514943 (+)	330	WP_010284667.1	cell division protein ZapA	-
F131LOC_RS02340 (F131LOC_002340)	-	515241..515888 (+)	648	WP_103972323.1	5-formyltetrahydrofolate cyclo-ligase	-
F131LOC_RS02345 (F131LOC_002345)	nadR	515885..517138 (-)	1254	WP_095701481.1	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	-
F131LOC_RS02350 (F131LOC_002350)	radA	517258..518640 (-)	1383	WP_103972311.1	DNA repair protein RadA	Machinery gene
F131LOC_RS02355 (F131LOC_002355)	serB	518658..519635 (-)	978	WP_103972312.1	phosphoserine phosphatase	-
F131LOC_RS02360 (F131LOC_002360)	-	519792..520490 (+)	699	WP_010296287.1	YtjB family periplasmic protein	-
F131LOC_RS02365 (F131LOC_002365)	-	520539..521450 (-)	912	WP_103972313.1	hypothetical protein	-
F131LOC_RS02370 (F131LOC_002370)	prfC	521742..523331 (+)	1590	WP_103972314.1	peptide chain release factor 3	-

Sequence

Protein

• Length: 460 a.a.
• Molecular weight: 49572.14 Da
• Isoelectric Point: 7.4463

>NTDB_id=505921 F131LOC_RS02350 WP_103972311.1 517258..518640(-) (radA) [Pectobacterium versatile strain F131]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPHDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKAPASMQVFGVKKLADALAILDDL

Nucleotide

• Length: 1383 bp

>NTDB_id=505921 F131LOC_RS02350 WP_103972311.1 517258..518640(-) (radA) [Pectobacterium versatile strain F131]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCGCGCTGGCAAGGGCAATGCAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGCCTGGCCTCGGCGTCTGTGTCACGTTCTGACCGCCTCACTGGCTATG
CAGGCGAAAGCGCTGGCGTCAGCCGGGTACAGAAGCTCTCGGAAATCAGTCTTGAAGCCCTGCCGCGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGCGTCGTTCCCGGCAGCGCCATTCTGATCGGCGGTAGCCCCGGCGCGGG
TAAAAGTACCCTGCTGTTGCAAACGCTCTGCAAGCTGTCAGAAAACATGAAAACCCTGTATGTCACCGGCGAAGAATCGT
TGCAGCAGGTGGCAATGCGGGCACACAGACTCAATCTGCCGACCCAAAATCTCAACATGCTGTCGGAAACCAGCATCGAA
CAAATTTGCCTGATTGCCGAGCAGGAACAGCCGAAGCTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTGATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCAAAAGTATTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCTCGCTTCCGCACCCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAATGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCAATTTTTCTCAGCCGTGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTGGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAAATTCAAGCGCTGGTAGATCAA
TCGATGATGGCCAATCCGCGTCGCGTTGCGGTCGGGCTGGAGCAAAACCGATTAGCCATCCTGCTGGCGGTGCTGCATCG
CCACGGCGGCTTGCAGATGTCGGATCAGGATGTGTTCGTGAATGTCGTCGGCGGCGTTAAAGTCACCGAAACCAGTGCCG
ACCTGGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCACGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCCGCCAAGCATGGCTTCAAACGCGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGCCCCTGCCAGCATGCAGGTATTCGGCGTGAAAAAGCTAGCCGACGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

• Subunit ChlI of Mg-chelatase (ChlI) (348-433)

• AAA domain (AAA_25) (89-225)

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (9-36)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	48.261	100	0.483
radA	Streptococcus mitis NCTC 12261	42.637	98.913	0.422
radA	Streptococcus pneumoniae Rx1	42.637	98.913	0.422
radA	Streptococcus pneumoniae D39	42.637	98.913	0.422
radA	Streptococcus pneumoniae R6	42.637	98.913	0.422
radA	Streptococcus pneumoniae TIGR4	42.637	98.913	0.422
radA	Streptococcus mitis SK321	42.637	98.913	0.422