Detailed information NTG0505915

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6L85_RS04505
• Genome accession: NZ_CP077248
• Coordinates: 903966..905078 (+)
• Length: 370 a.a.
• NCBI ID: WP_008809216.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain FDAARGOS 1455
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 898966..910078

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L85_RS04480 (I6L85_04480)	-	899758..900489 (+)	732	WP_111723786.1	polyphosphate polymerase domain-containing protein	-
I6L85_RS04485 (I6L85_04485)	-	900500..901183 (+)	684	WP_046165485.1	DUF4956 domain-containing protein	-
I6L85_RS04490 (I6L85_04490)	rpsU	901310..901486 (+)	177	WP_000048054.1	30S ribosomal protein S21	-
I6L85_RS04495 (I6L85_04495)	mscL	901595..901975 (-)	381	WP_045503293.1	large conductance mechanosensitive channel protein MscL	-
I6L85_RS04500 (I6L85_04500)	dnaG	902182..903963 (+)	1782	WP_302053683.1	DNA primase	-
I6L85_RS04505 (I6L85_04505)	rpoS	903966..905078 (+)	1113	WP_008809216.1	RNA polymerase sigma factor RpoD	Regulator
I6L85_RS04510 (I6L85_04510)	-	905131..905469 (+)	339	WP_012000664.1	metal-sulfur cluster assembly factor	-
I6L85_RS04525 (I6L85_04525)	-	906243..906623 (+)	381	WP_111723784.1	CidA/LrgA family protein	-
I6L85_RS04530 (I6L85_04530)	-	906616..907314 (+)	699	WP_008809213.1	LrgB family protein	-
I6L85_RS04535 (I6L85_04535)	-	907754..908323 (+)	570	WP_111723783.1	TlpA disulfide reductase family protein	-
I6L85_RS04540 (I6L85_04540)	mnmE	908473..909846 (-)	1374	WP_111723782.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42405.08 Da
• Isoelectric Point: 4.5140

>NTDB_id=505915 I6L85_RS04505 WP_008809216.1 903966..905078(+) (rpoS) [Streptococcus gordonii strain FDAARGOS 1455]
MATKQKEVTTFDVQVAEFIRNHKKTGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=505915 I6L85_RS04505 WP_008809216.1 903966..905078(+) (rpoS) [Streptococcus gordonii strain FDAARGOS 1455]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAAACTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATCTATTGCAAC
GTATCCAAGATGCAGGGATCTCTATCACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTGACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAACGATCCTGTTCGTATGTACTTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTCGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGCTTGGTAGTTTCTATTGCAAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACCTA
TGCAACTTGGTGGATCCGTCAGGCCATTACACGTGCGATCGCTGACCAAGCTAGAACAATCCGAATTCCAGTTCACATGG
TAGAAACGATTAACAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTAGGTCAAGATCCAACACCAGAGCAGATT
GCTGAGCGTATGGATATGACACCAGATAAGGTTCGTGAGATTCTTAAGATTGCTCAGGAGCCAGTTTCTCTGGAAACACC
TATCGGTGAAGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTATACAACTC
GTGTTGTTCTTCGTGAGCAGCTGGATGAAGTTTTAGACACCCTTACAGATCGTGAAGAAAATGTTCTTCGTCTGCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTCTTCAATGTGACCCGTGAACGCATCCGCCAAAT
CGAAGCTAAAGCCCTACGTAAACTACGCCACCCAAGTCGTAGCAAGCCACTCCGTGATTTCATTGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.918	78.919	0.37