Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexA   Type   Machinery gene
Locus tag   I6L85_RS03865 Genome accession   NZ_CP077248
Coordinates   774898..778548 (+) Length   1216 a.a.
NCBI ID   WP_111723875.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 769898..783548
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS03860 (I6L85_03860) rexB 771620..774901 (+) 3282 WP_111723876.1 ATP-dependent nuclease subunit B Machinery gene
  I6L85_RS03865 (I6L85_03865) rexA 774898..778548 (+) 3651 WP_111723875.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  I6L85_RS03870 (I6L85_03870) - 778582..778887 (+) 306 WP_045503652.1 DUF4298 domain-containing protein -
  I6L85_RS03875 (I6L85_03875) hisC 779361..780419 (+) 1059 WP_111723874.1 histidinol-phosphate transaminase -
  I6L85_RS03880 (I6L85_03880) - 780475..781464 (+) 990 WP_111723873.1 ATP phosphoribosyltransferase regulatory subunit -
  I6L85_RS03885 (I6L85_03885) hisG 781461..782105 (+) 645 WP_004186424.1 ATP phosphoribosyltransferase -
  I6L85_RS03890 (I6L85_03890) hisD 782102..783394 (+) 1293 WP_111723872.1 histidinol dehydrogenase -

Sequence

Protein


Download         Length: 1216 a.a.        Molecular weight: 140417.20 Da        Isoelectric Point: 5.2224

>NTDB_id=505911 I6L85_RS03865 WP_111723875.1 774898..778548(+) (rexA) [Streptococcus gordonii strain FDAARGOS 1455]
MRKKSFLSPEEISQLQHFEATSNKEQKRTAEQIEAIYSSGQNILVSASAGSGKTFVMVQRIIDQILRGVSIQELFISTFT
VKAAGELKERLEKELSKVLKESQDEELKQHLAQQLAAIATADIGTMDSFTQKLLNKYGYLLGLAPNFRILQSASEQTMLQ
NEVFQQLFEQYYTGEQKEIFEKLVKNFTGKKKNISGFRQQVYAIYQFLQSTSNPQRWLQDFFLKGYEETDFSRERDKILQ
QVKGALFELEDYFRFHLDHEGREFAGAKYQENVLLALDKLGSLRELSSEQDYFSVLKDVVLLSRASGGRALTITTRKEEL
KELADTFNQGRKERIEHLRGLESSLYQFEFLEKYQDDSLPLLDLLRDFMSDFTRTYLERKKTENAFEFGDISHFAIQILE
DFPQVRSFYQERYHEVMVDEYQDTNHTQERMLELLSNGHNRFMVGDIKQSIYRFRQADPQIFNDKFRLYQADPRQGKLIV
LKENFRSHVEVLEATNDVFKRLMDEQVGEINYDEIHYLVAGNPTKASHNPKNRAEFLLYDSTAASEELSEESISAGEVSL
VIKEIIRLHEEEEVAFKDITLLTASRTRNDIILAEFDKHNIPLVPDGGEDNYLQSVEVMVMLDTLRTINNPLNDYALTAL
LKSAMFDFGEDELARIALQKSQEKSQENLYVKLENALTNQGLHPDLILPDLKKKLELFKKTLLSWRTFAKTHSLYDLIWK
IYQDRFYYDYVGALPNGAQRQANLYALSLRANDYEKSSFKGLSRFISMINKILENQHDLASVPYAAPQDAVHLMTVHKSK
GLEFKYVFLLNMDKAFNRQDASSSIILSRKNGIGIKYIADVEVEYPEEVKPRSIRLSMDTLPYQQNLEEIKLASLSEQMR
LLYVAMTRAETKLYLVGKGSQEKLEKRSWGQAEQGLLSASIRSQLTSFQDWIYAIQAVFSEDHLAFDLRFVRDEDLTADK
IGQIHHSNPFDADDLTDNRQSDDIGRALDILESVDRLNSQYRSAIELPSVRTPSQIKKFYEPIMDTEGLDIMDERVAFRS
QPNFDLPDFGRKAKVTGAQVGSAVHELMQRIPLDQKPDMAVLKSSLRQVQAEESVKKQIDLNKIASFFETQLGEILLANS
DKLHREAPFAMLKRDETSGQEFVLRGILDGYLLFEDRIILFDYKTDKYKEASELIARYRSQLDLYAQALSRSYGISRIEK
YLILLGGEQLQVVQVD

Nucleotide


Download         Length: 3651 bp        

>NTDB_id=505911 I6L85_RS03865 WP_111723875.1 774898..778548(+) (rexA) [Streptococcus gordonii strain FDAARGOS 1455]
ATGAGAAAGAAGTCTTTTTTAAGTCCAGAAGAAATCAGTCAGCTACAGCATTTTGAAGCCACTTCTAATAAGGAACAGAA
ACGAACTGCTGAGCAGATTGAGGCTATTTATTCCTCAGGTCAAAACATCCTAGTCTCTGCATCAGCTGGATCAGGGAAAA
CCTTTGTCATGGTTCAGAGGATTATTGACCAGATTCTCCGTGGAGTGTCTATCCAGGAACTCTTTATCTCAACCTTTACT
GTAAAAGCGGCAGGAGAACTTAAAGAACGTCTAGAAAAAGAGTTAAGTAAAGTCCTCAAAGAAAGTCAGGATGAAGAACT
TAAACAGCACCTAGCCCAGCAGTTAGCGGCTATTGCCACGGCTGATATTGGGACCATGGACTCTTTCACACAAAAGCTTC
TTAATAAGTATGGCTATCTTCTGGGCCTGGCCCCTAATTTTCGTATTCTCCAGTCAGCTAGTGAGCAGACTATGCTACAA
AATGAAGTCTTTCAGCAGCTTTTTGAGCAATATTATACTGGTGAGCAGAAGGAAATTTTTGAAAAGTTAGTCAAAAATTT
CACGGGCAAGAAAAAGAACATCTCTGGTTTTCGCCAGCAAGTTTACGCCATTTACCAGTTTCTTCAATCAACCAGCAATC
CTCAGAGATGGTTGCAGGACTTTTTCCTTAAAGGCTATGAAGAGACAGATTTTTCTCGTGAGAGAGACAAAATTTTACAG
CAAGTGAAAGGTGCTCTTTTTGAGCTCGAAGATTATTTCCGTTTTCATTTGGATCACGAGGGACGTGAATTTGCAGGAGC
TAAATACCAGGAAAATGTGTTGCTTGCGCTAGATAAACTGGGAAGTTTGCGGGAATTGTCCTCTGAGCAGGACTATTTCA
GCGTCTTAAAAGACGTGGTTCTTCTATCACGGGCTAGTGGCGGCCGAGCCTTGACCATCACTACTCGCAAGGAAGAATTA
AAAGAGCTGGCTGATACCTTTAACCAAGGACGTAAAGAAAGGATCGAGCATTTGCGAGGTCTTGAGTCCAGCCTCTATCA
ATTTGAGTTCCTTGAGAAGTATCAAGATGATAGTCTGCCTCTCTTAGATTTGCTGCGCGATTTCATGAGTGATTTTACTC
GAACTTATCTAGAACGTAAAAAAACAGAGAATGCTTTTGAGTTTGGGGATATCAGCCATTTTGCGATACAGATTCTAGAG
GACTTCCCACAGGTAAGAAGCTTCTATCAAGAGCGTTACCATGAAGTCATGGTCGATGAGTACCAGGACACCAACCACAC
TCAGGAGAGAATGTTGGAGCTCTTATCTAACGGCCATAATCGCTTTATGGTGGGAGATATCAAACAATCCATCTATCGTT
TCCGTCAAGCAGATCCTCAGATTTTTAATGATAAGTTTCGGCTTTATCAAGCAGATCCGAGACAAGGGAAATTGATTGTC
CTCAAGGAGAATTTTCGCAGTCATGTAGAAGTACTGGAAGCAACCAATGATGTCTTTAAGAGACTGATGGATGAGCAGGT
CGGGGAAATCAACTATGATGAGATCCATTATTTGGTGGCAGGAAATCCGACGAAAGCATCACATAACCCCAAAAATAGGG
CTGAATTCCTCCTTTATGATTCGACGGCAGCAAGCGAGGAACTAAGTGAGGAAAGTATCTCTGCTGGAGAAGTTTCTCTA
GTTATCAAAGAAATCATTCGCCTGCATGAGGAAGAAGAGGTTGCCTTTAAGGACATTACTCTTTTAACGGCTTCTCGGAC
TCGAAATGATATAATCTTGGCTGAGTTTGACAAGCACAATATTCCTCTTGTACCAGATGGAGGAGAAGACAATTACCTCC
AGTCTGTCGAGGTCATGGTCATGCTGGACACTTTGCGAACGATCAATAATCCCTTAAATGACTATGCCTTGACAGCACTA
CTCAAATCAGCAATGTTTGACTTTGGAGAAGATGAGCTGGCTCGAATAGCGCTACAGAAAAGTCAGGAAAAATCGCAGGA
AAATCTCTATGTGAAGTTAGAAAATGCCTTGACTAATCAAGGATTGCATCCAGACTTAATCTTGCCAGACCTTAAAAAGA
AGCTAGAGCTCTTTAAAAAGACGCTCTTATCGTGGAGAACCTTTGCTAAAACTCATTCTCTGTACGATTTGATTTGGAAG
ATTTATCAAGACCGCTTTTATTATGACTATGTCGGAGCCTTGCCCAATGGAGCCCAGCGTCAAGCCAATCTCTATGCCCT
ATCACTCAGAGCTAATGACTACGAGAAATCAAGCTTTAAAGGGCTGTCTCGATTCATCAGCATGATTAATAAGATTTTAG
AGAACCAGCACGATTTGGCTAGCGTTCCCTATGCCGCACCACAAGATGCGGTTCATCTGATGACAGTCCACAAGAGTAAG
GGACTAGAGTTCAAGTATGTCTTTCTGCTTAATATGGACAAGGCATTTAACCGCCAAGATGCCAGTTCTAGCATTATCTT
GAGTCGTAAAAATGGGATTGGGATTAAATATATCGCTGATGTAGAGGTTGAATATCCAGAAGAAGTGAAACCGAGATCAA
TCCGTTTGTCGATGGACACGCTACCCTACCAACAAAATTTAGAAGAAATCAAGCTAGCTAGTCTTTCTGAGCAGATGCGC
TTGCTTTATGTAGCTATGACACGGGCTGAAACCAAGCTCTACTTAGTTGGAAAAGGCAGTCAAGAAAAACTTGAGAAGCG
AAGCTGGGGGCAAGCAGAACAGGGGCTTTTATCGGCGTCCATACGTAGTCAGCTAACTTCTTTCCAAGACTGGATTTATG
CCATCCAGGCTGTTTTTTCAGAAGATCACCTTGCTTTTGATTTGAGATTTGTCAGAGACGAGGATTTGACTGCTGACAAG
ATTGGCCAGATCCACCATTCAAATCCCTTTGATGCGGATGATTTGACAGACAACCGTCAGTCCGATGATATCGGCAGGGC
ACTGGATATCTTAGAAAGTGTAGATCGACTAAATAGCCAATACCGCTCTGCTATTGAGCTGCCTAGTGTGCGAACGCCAA
GCCAGATTAAGAAGTTCTATGAGCCAATCATGGACACGGAAGGCCTGGATATCATGGATGAGCGAGTAGCATTTCGGTCT
CAGCCTAACTTTGACTTACCTGATTTCGGCAGGAAAGCCAAAGTGACTGGGGCGCAAGTCGGTAGTGCTGTTCATGAGCT
AATGCAAAGGATTCCTTTAGATCAGAAGCCGGACATGGCAGTTTTAAAATCAAGTCTAAGACAAGTTCAAGCAGAAGAGT
CTGTGAAAAAACAGATTGACCTCAACAAGATTGCAAGTTTCTTTGAGACTCAGCTTGGTGAAATCTTGCTAGCTAACTCA
GATAAGTTGCATCGAGAAGCGCCTTTTGCCATGCTTAAGAGGGACGAAACCAGCGGTCAGGAATTTGTTCTTCGGGGGAT
TCTGGATGGCTATCTGCTCTTTGAGGATCGGATTATCCTCTTTGACTACAAGACGGATAAATACAAGGAAGCATCTGAGT
TGATTGCTCGCTACCGAAGCCAGCTAGACTTATATGCTCAAGCACTCAGCCGTTCTTATGGTATTTCTCGGATTGAAAAA
TATTTGATTCTGCTGGGAGGTGAACAACTACAGGTTGTTCAGGTGGACTGA

Domains

Predicted by InterProScan.

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(29-465)

UvrD-like helicase C-terminal domain (UvrD_C)

(479-895)

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1055-1192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexA Streptococcus pneumoniae R6

60.641

100

0.607