Detailed information    

insolico Bioinformatically predicted

Overview

Name   med   Type   Regulator
Locus tag   MY9_RS06285 Genome accession   NC_017743
Coordinates   1254531..1255484 (+) Length   317 a.a.
NCBI ID   WP_014663517.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1249531..1260484
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS06260 (MY9_1226) argF 1251363..1252322 (+) 960 WP_014663514.1 ornithine carbamoyltransferase -
  MY9_RS06265 (MY9_1227) - 1252408..1252587 (+) 180 WP_003245356.1 YjzC family protein -
  MY9_RS06270 (MY9_1228) - 1252633..1252818 (-) 186 WP_003245236.1 DUF2929 domain-containing protein -
  MY9_RS06275 (MY9_1229) - 1253068..1253802 (+) 735 WP_014663515.1 hypothetical protein -
  MY9_RS06280 (MY9_1230) - 1253884..1254441 (+) 558 WP_014663516.1 hypothetical protein -
  MY9_RS06285 (MY9_1231) med 1254531..1255484 (+) 954 WP_014663517.1 transcriptional regulator Med Regulator
  MY9_RS06290 (MY9_1232) comZ 1255499..1255690 (+) 192 WP_003224559.1 ComG operon transcriptional repressor ComZ Regulator
  MY9_RS06295 (MY9_1233) - 1255720..1255947 (-) 228 WP_081483608.1 hypothetical protein -
  MY9_RS06300 (MY9_1234) fabH 1256112..1257050 (+) 939 WP_014663519.1 beta-ketoacyl-ACP synthase III -
  MY9_RS06305 (MY9_1235) fabF 1257073..1258314 (+) 1242 WP_014663520.1 beta-ketoacyl-ACP synthase II -
  MY9_RS06310 (MY9_1236) - 1258389..1259174 (+) 786 WP_014663521.1 DUF2268 domain-containing protein -
  MY9_RS06315 (MY9_1237) appD 1259366..1260352 (+) 987 WP_014663522.1 oligopeptide ABC transporter ATP-binding protein AppD -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35297.76 Da        Isoelectric Point: 4.5025

>NTDB_id=50591 MY9_RS06285 WP_014663517.1 1254531..1255484(+) (med) [Bacillus sp. JS]
MITRLVMIFSVLLLLSGCGQTPFKGKIEKVGMLFPDTINDLVWGTKGYKGLLNIQSKYNVDVYYKEGVKTEEDIINAIED
FHKRGVNLLYGHGSEYAEVFNLVGEDYPDMEFVISNAKAKADNVTSVHFSGEAMGFFGGMTAAHMSKTNQVGVIASFTWQ
PEVDGFIKGAKYENPDIEVNTKYTDHWDDDTTAVKLYQKMKNEGADVVYPAGDGYNVPVIQQIKKDGLYAIGYVTDQSDL
GENTVLTSTVQNVDKAYEIIAEQFNKGTLEGGDHYYDLNTGVVEMGTFSPLVDEDFQQRIAKLIKTYNKTGDLPKNE

Nucleotide


Download         Length: 954 bp        

>NTDB_id=50591 MY9_RS06285 WP_014663517.1 1254531..1255484(+) (med) [Bacillus sp. JS]
TTGATCACAAGGCTTGTCATGATCTTTTCTGTCCTCCTTTTATTGAGTGGATGTGGACAAACTCCGTTCAAAGGAAAAAT
TGAGAAGGTCGGCATGCTCTTTCCTGATACGATTAATGACCTCGTATGGGGCACAAAAGGGTATAAAGGATTACTGAATA
TACAATCCAAATACAATGTGGACGTCTACTATAAAGAAGGCGTTAAAACAGAAGAAGATATCATAAATGCGATTGAGGAT
TTTCATAAGAGGGGCGTCAATCTGCTCTACGGCCATGGGAGTGAATATGCAGAGGTGTTTAACTTGGTCGGCGAAGATTA
TCCAGATATGGAATTCGTCATTTCCAATGCGAAAGCGAAAGCTGACAATGTGACGAGTGTCCATTTTAGCGGGGAAGCAA
TGGGCTTTTTTGGAGGAATGACTGCTGCCCATATGTCGAAAACGAATCAGGTCGGTGTCATTGCTTCCTTTACGTGGCAG
CCTGAGGTTGACGGTTTTATCAAAGGAGCCAAGTATGAAAATCCAGATATAGAAGTAAACACGAAATATACGGATCATTG
GGATGATGATACGACAGCAGTAAAGCTTTATCAGAAAATGAAGAACGAAGGCGCGGATGTTGTGTATCCTGCTGGAGACG
GGTATAATGTTCCTGTTATTCAGCAAATCAAAAAAGACGGGCTTTATGCCATCGGCTACGTTACAGATCAATCGGACCTG
GGCGAGAATACCGTATTAACCAGCACGGTGCAAAATGTGGACAAGGCCTATGAAATCATTGCTGAGCAATTCAACAAAGG
CACCCTTGAAGGCGGCGATCATTACTACGACCTGAATACGGGAGTAGTCGAGATGGGAACATTCAGCCCGCTCGTCGATG
AAGACTTTCAGCAAAGAATCGCCAAGCTGATCAAAACGTACAACAAAACAGGCGATCTGCCAAAAAACGAGTAA

Domains

Predicted by InterproScan.

ABC transporter substrate-binding protein PnrA-like (Bmp)

(27-317)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  med Bacillus subtilis subsp. subtilis str. 168

99.369

100

0.994

Multiple sequence alignment