Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   ICC24_RS13275 Genome accession   NZ_CP065029
Coordinates   2567645..2568445 (-) Length   266 a.a.
NCBI ID   WP_003183361.1    Uniprot ID   -
Organism   Bacillus licheniformis strain LCDD6     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2562645..2573445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICC24_RS13240 (ICC24_13240) - 2563839..2564093 (+) 255 WP_003183348.1 DUF2627 domain-containing protein -
  ICC24_RS13245 (ICC24_13245) - 2564144..2564869 (-) 726 WP_009327925.1 glycerophosphodiester phosphodiesterase -
  ICC24_RS13250 (ICC24_13250) - 2565003..2565623 (-) 621 WP_044822591.1 N-acetylmuramoyl-L-alanine amidase family protein -
  ICC24_RS13255 (ICC24_13255) - 2565659..2565979 (-) 321 WP_034291702.1 hypothetical protein -
  ICC24_RS22180 - 2565978..2566310 (+) 333 WP_235611113.1 hypothetical protein -
  ICC24_RS13265 (ICC24_13265) - 2566465..2566848 (-) 384 WP_003183357.1 serine O-acetyltransferase -
  ICC24_RS13270 (ICC24_13270) - 2566977..2567180 (-) 204 WP_231082760.1 LCI fold-containing protein -
  ICC24_RS13275 (ICC24_13275) spo0A 2567645..2568445 (-) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  ICC24_RS13280 (ICC24_13280) spoIVB 2568735..2570051 (-) 1317 WP_044051837.1 SpoIVB peptidase -
  ICC24_RS13285 (ICC24_13285) recN 2570201..2571931 (-) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  ICC24_RS13290 (ICC24_13290) ahrC 2571963..2572412 (-) 450 WP_003183369.1 transcriptional regulator AhrC/ArgR -
  ICC24_RS13295 (ICC24_13295) - 2572578..2573423 (-) 846 WP_003183371.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29541.06 Da        Isoelectric Point: 6.6109

>NTDB_id=505886 ICC24_RS13275 WP_003183361.1 2567645..2568445(-) (spo0A) [Bacillus licheniformis strain LCDD6]
MEKIKVCVADDNRELVGLLSEYIEGQSDMEVLGVAYNGQECLSLFKDKEPDVLVLDIIMPHLDGLAVLERLRESQLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNGSQLTHRAPSSQSSVLRPQPESPKKNLDASITTII
HEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTVS
MSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 801 bp        

>NTDB_id=505886 ICC24_RS13275 WP_003183361.1 2567645..2568445(-) (spo0A) [Bacillus licheniformis strain LCDD6]
GTGGAGAAAATTAAAGTATGTGTTGCTGATGATAACAGGGAGCTTGTCGGCCTATTAAGCGAATATATCGAGGGACAGAG
CGACATGGAAGTGCTTGGTGTCGCATACAACGGACAGGAATGCCTTTCTTTGTTTAAAGACAAGGAGCCCGACGTGCTTG
TGCTGGATATAATCATGCCTCATCTCGACGGATTGGCCGTTCTTGAAAGGCTGAGGGAATCGCAGCTTAAAAAGCAGCCG
AATGTCATCATGCTGACGGCGTTCGGCCAGGAAGACGTGACCAAAAAAGCTGTAGATTTAGGCGCGTCGTATTTTATTTT
GAAGCCTTTTGACATGGAGAATTTAGTCGGACATATCCGCCAGGTCAGCGGAAACGGATCTCAATTGACACACCGTGCCC
CGTCCTCTCAAAGCAGTGTGCTTCGGCCGCAGCCTGAATCGCCGAAGAAAAACCTGGACGCCAGCATCACGACCATCATC
CACGAAATCGGCGTACCTGCTCATATTAAAGGCTATTTGTACTTAAGAGAAGCCATCTCCATGGTATATAACGACATCGA
ACTGCTCGGCAGCATTACAAAAGTGCTTTATCCGGATATCGCCAAAAAATTCAACACGACTGCAAGCCGCGTCGAACGGG
CGATTCGCCACGCCATCGAAGTCGCATGGAGCAGAGGCAACATCGACTCGATTTCGTCACTTTTCGGCTACACAGTCAGC
ATGTCAAAAGCAAAGCCGACCAATAGTGAGTTCATCGCGATGGTCGCAGACAAGCTGAGACTGGAGCATAAGGCTTCTTA
A

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(156-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

92.135

100

0.925