Detailed information    

insolico Bioinformatically predicted

Overview

Name   comR   Type   Regulator
Locus tag   I6L85_RS01935 Genome accession   NZ_CP077248
Coordinates   364186..365103 (+) Length   305 a.a.
NCBI ID   WP_111724114.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   activate transcription of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 359186..370103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS01915 (I6L85_01915) scaA 359482..360414 (-) 933 WP_111724118.1 metal ABC transporter substrate-binding lipoprotein/adhesin ScaA -
  I6L85_RS01920 (I6L85_01920) - 360441..361277 (-) 837 WP_302053682.1 metal ABC transporter permease -
  I6L85_RS01925 (I6L85_01925) - 361279..361998 (-) 720 WP_111724116.1 metal ABC transporter ATP-binding protein -
  I6L85_RS01930 (I6L85_01930) - 362145..364037 (+) 1893 WP_111724115.1 M13-type metalloendopeptidase -
  I6L85_RS01935 (I6L85_01935) comR 364186..365103 (+) 918 WP_111724114.1 XRE family transcriptional regulator Regulator
  I6L85_RS01940 (I6L85_01940) - 365247..366176 (+) 930 WP_111724113.1 ABC transporter ATP-binding protein -
  I6L85_RS01945 (I6L85_01945) - 366169..367047 (+) 879 WP_111724112.1 ABC transporter permease -
  I6L85_RS01950 (I6L85_01950) - 367122..367820 (-) 699 WP_020992724.1 ion transporter -
  I6L85_RS01955 (I6L85_01955) - 368116..368679 (-) 564 WP_048777655.1 isoprenylcysteine carboxylmethyltransferase family protein -

Sequence

Protein


Download         Length: 305 a.a.        Molecular weight: 36375.65 Da        Isoelectric Point: 4.4633

>NTDB_id=505885 I6L85_RS01935 WP_111724114.1 364186..365103(+) (comR) [Streptococcus gordonii strain FDAARGOS 1455]
MEFKEELGQKIQSLREEKGLSRQAICGVEDILTTRQLQRIEKGQSLPTIATALYIAEQLEVSLDRLANRERFELPSGYLE
LKYRLEKLYHYGDGERLQQREELIEEIYRKYFDQLPEEEQLYLQIKQAKNDMILTENIAYDQGLIDEYLDQALAKEKLTE
MDLEIIDLRLLALGLKDFDKKEFTYLLNKLLEAVADYPTSGLEKIQTRIIFVAGVLSHYQEYDRLPEILRVLEELMLRRN
DFQDRVFSYALQWKIALFLENNLEKAEDNYQKVKLMLELLPEDVLKENMRLDWEQDIRRYSKIDE

Nucleotide


Download         Length: 918 bp        

>NTDB_id=505885 I6L85_RS01935 WP_111724114.1 364186..365103(+) (comR) [Streptococcus gordonii strain FDAARGOS 1455]
GTGGAATTTAAGGAAGAGCTCGGACAGAAAATTCAATCTCTAAGAGAAGAAAAAGGCTTGAGTCGTCAGGCAATTTGTGG
GGTAGAAGACATTTTGACAACGCGGCAGCTACAGCGAATTGAAAAAGGCCAGTCTCTGCCTACCATAGCAACAGCTCTCT
ATATTGCTGAGCAACTGGAGGTATCACTGGATAGACTAGCAAATAGAGAGCGATTCGAATTGCCATCAGGCTATCTTGAA
TTGAAGTATCGCTTGGAAAAGCTTTATCACTATGGCGATGGAGAACGTCTTCAACAGAGAGAAGAGCTGATCGAGGAAAT
CTATCGGAAGTATTTCGATCAGCTCCCTGAGGAAGAACAACTTTATCTTCAGATTAAGCAGGCCAAGAACGATATGATTT
TAACGGAAAATATTGCCTATGATCAAGGCTTAATAGATGAATATCTGGATCAGGCTTTGGCCAAAGAAAAATTGACGGAA
ATGGATCTAGAAATCATTGATTTACGCCTGTTGGCGCTTGGTTTGAAAGATTTTGATAAGAAGGAGTTTACTTATTTGCT
AAACAAGTTGCTTGAGGCGGTAGCTGATTATCCTACCAGCGGCTTGGAAAAAATCCAGACCAGAATCATTTTTGTGGCGG
GGGTCTTGTCTCATTATCAAGAATATGACCGACTACCCGAAATATTAAGAGTCCTAGAAGAGCTGATGTTGAGGCGAAAC
GACTTTCAAGATCGTGTCTTTAGCTATGCGCTTCAGTGGAAAATCGCCCTCTTCTTGGAAAATAATCTCGAAAAAGCTGA
GGATAACTATCAAAAGGTCAAGCTAATGCTAGAGCTATTGCCAGAAGATGTCCTTAAGGAAAATATGAGACTGGACTGGG
AGCAGGATATAAGACGCTATAGTAAAATTGATGAATAA

Domains

Predicted by InterProScan.

ComR tetratricopeptide (ComR_TPR)

(75-293)

Helix-turn-helix (HTH_3)

(11-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comR Streptococcus mutans UA159

37.71

97.377

0.367