Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   ICC24_RS10480 Genome accession   NZ_CP065029
Coordinates   2032412..2032840 (+) Length   142 a.a.
NCBI ID   WP_003182220.1    Uniprot ID   A0A1Y0YFI7
Organism   Bacillus licheniformis strain LCDD6     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2027412..2037840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICC24_RS10450 (ICC24_10450) - 2027597..2028205 (+) 609 WP_009328237.1 flavin reductase family protein -
  ICC24_RS10455 (ICC24_10455) wrbA 2028404..2029015 (+) 612 WP_011198006.1 NAD(P)H:quinone oxidoreductase -
  ICC24_RS10460 (ICC24_10460) - 2029336..2029476 (+) 141 WP_003182211.1 hypothetical protein -
  ICC24_RS10465 (ICC24_10465) - 2029469..2030302 (+) 834 WP_003182213.1 prohibitin family protein -
  ICC24_RS10470 (ICC24_10470) - 2030393..2031154 (+) 762 WP_003182215.1 hypothetical protein -
  ICC24_RS10475 (ICC24_10475) - 2031214..2032053 (+) 840 WP_003182218.1 thymidylate synthase -
  ICC24_RS10480 (ICC24_10480) nucA/comI 2032412..2032840 (+) 429 WP_003182220.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  ICC24_RS10485 (ICC24_10485) lexA 2033036..2033659 (-) 624 WP_003182222.1 transcriptional repressor LexA -
  ICC24_RS10490 (ICC24_10490) yneA 2033812..2034123 (+) 312 WP_003182225.1 cell division suppressor protein YneA -
  ICC24_RS10495 (ICC24_10495) - 2034142..2034789 (+) 648 WP_003182227.1 YneB family resolvase-like protein -
  ICC24_RS10500 (ICC24_10500) - 2034855..2035088 (+) 234 WP_003182231.1 DUF896 domain-containing protein -
  ICC24_RS10505 (ICC24_10505) tkt 2035255..2037258 (+) 2004 WP_145614089.1 transketolase -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15332.29 Da        Isoelectric Point: 7.8987

>NTDB_id=505884 ICC24_RS10480 WP_003182220.1 2032412..2032840(+) (nucA/comI) [Bacillus licheniformis strain LCDD6]
MIKKWAVHLLFSALVLLGLSGGAAYSPQHAEGAARYDDILYFPASRYPETGAHISDAIKAGHSDVCTIERSGADKRRQES
LKGIPTKPGFDRDEWPMAMCEEGGKGASVRYVSSSDNRGAGSWVGNRLSGFADGTRILFIVQ

Nucleotide


Download         Length: 429 bp        

>NTDB_id=505884 ICC24_RS10480 WP_003182220.1 2032412..2032840(+) (nucA/comI) [Bacillus licheniformis strain LCDD6]
ATGATCAAAAAATGGGCGGTTCATCTGCTGTTTTCCGCATTGGTACTGCTTGGGCTTTCGGGAGGCGCCGCATATTCTCC
TCAGCATGCCGAAGGTGCTGCAAGGTATGACGACATATTGTATTTTCCGGCATCCCGCTATCCCGAAACCGGCGCTCATA
TCAGCGACGCAATCAAAGCGGGGCATTCAGATGTCTGCACGATTGAAAGATCGGGAGCGGATAAGCGCCGCCAGGAATCA
CTGAAGGGGATTCCGACTAAGCCGGGCTTTGACCGTGACGAATGGCCGATGGCCATGTGTGAAGAAGGGGGCAAAGGAGC
GTCTGTCAGATATGTCAGCTCATCGGATAACCGCGGAGCCGGCTCCTGGGTCGGGAACAGGCTGAGCGGTTTCGCCGACG
GGACGAGAATTTTGTTTATCGTTCAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-135)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YFI7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

58.73

88.732

0.521