Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6L85_RS01540 Genome accession   NZ_CP077248
Coordinates   276582..279413 (+) Length   943 a.a.
NCBI ID   WP_111724158.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1455     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 271582..284413
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L85_RS01520 (I6L85_01520) - 273051..274070 (+) 1020 WP_111724160.1 hypothetical protein -
  I6L85_RS01525 (I6L85_01525) - 274268..274777 (+) 510 WP_111724159.1 GNAT family N-acetyltransferase -
  I6L85_RS01530 (I6L85_01530) - 274815..275489 (-) 675 WP_020992710.1 DUF1129 family protein -
  I6L85_RS01535 (I6L85_01535) - 275508..276452 (-) 945 WP_008809852.1 magnesium transporter CorA family protein -
  I6L85_RS01540 (I6L85_01540) uvrA 276582..279413 (+) 2832 WP_111724158.1 excinuclease ABC subunit UvrA Machinery gene
  I6L85_RS01545 (I6L85_01545) - 279565..280626 (+) 1062 WP_111724157.1 Xaa-Pro peptidase family protein -
  I6L85_RS01550 (I6L85_01550) - 280678..281610 (+) 933 WP_111724156.1 Tim44-like domain-containing protein -
  I6L85_RS01555 (I6L85_01555) - 281619..282722 (+) 1104 WP_111724155.1 SPFH domain-containing protein -
  I6L85_RS01560 (I6L85_01560) efp 282862..283422 (+) 561 WP_009754238.1 elongation factor P -
  I6L85_RS01565 (I6L85_01565) - 283442..283831 (+) 390 WP_111724154.1 Asp23/Gls24 family envelope stress response protein -
  I6L85_RS01570 (I6L85_01570) nusB 283824..284249 (+) 426 WP_111724153.1 transcription antitermination factor NusB -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104359.52 Da        Isoelectric Point: 6.1790

>NTDB_id=505880 I6L85_RS01540 WP_111724158.1 276582..279413(+) (uvrA) [Streptococcus gordonii strain FDAARGOS 1455]
MQDKIVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCVNGHGAITASSVEQIVDQVLELPERQRLQILAPVIRKKK
GQHKTVFDKIQKDGYVRVRVDGEIYDVTEVPDLSKSKQHDIEVVVDRIVIKEGVRSRLFDSVEAALRIAEGYVVIDTMDG
KELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEVDLDLVVPDSSMTLREGALAPWNPISSNYYPQML
EQAMTSFGIDMDKPFEELSEEEKQLIFFGSDGREFHFHYENEFGGVRDIDIPFEGVVTNINRRYHETNSDYTRTQMRTYM
NELFCVACHGYRLSPQALSVRVGGEAGLHIGEISDLSIADHLLQLDKLSLTDNEATIARPILKEIHDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DVGPGAGVFGGEIVAAGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFIEITGAAENNLQNITARFPLGKFIAVT
GVSGSGKSTLVNSILKKTLAQRLNRNSDKPGKFKTISGVDYIDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKEKNISQILDMTVNDAVDFF
KHIPKINRKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDISRLLKVLDRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIIATGTPEEVAANPTSYTGQYLKEKLHQK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=505880 I6L85_RS01540 WP_111724158.1 276582..279413(+) (uvrA) [Streptococcus gordonii strain FDAARGOS 1455]
ATGCAAGATAAAATTGTGATCCATGGAGCGCGAGCTCATAATCTAAAAAATATTGATGTAGAAATTCCTAGAGACAAGCT
GGTCGTGGTGACAGGATTATCCGGTTCAGGTAAGTCCAGTCTGGCTTTCGACACTCTCTATGCTGAGGGGCAACGTCGCT
ATGTTGAGAGTTTGTCGGCCTATGCTCGGCAGTTCTTAGGTAATATGGAAAAGCCGGATGTGGACTCAATTGATGGTCTT
AGCCCGGCTATTTCCATCGATCAAAAGACGACTAGTAAAAATCCCCGTTCAACTGTAGGAACTGTTACTGAGATCAATGA
CTACTTGCGCTTGCTCTATGCCCGTGTTGGAACACCATACTGTGTCAACGGCCACGGAGCTATTACGGCTTCCTCTGTTG
AGCAGATTGTAGACCAAGTCTTGGAGCTTCCAGAGCGCCAGCGCTTGCAGATTTTGGCGCCAGTTATCCGCAAGAAAAAG
GGCCAGCATAAGACTGTCTTTGATAAGATTCAGAAAGACGGCTACGTCCGAGTGCGCGTGGATGGTGAAATTTACGATGT
GACGGAAGTTCCTGACCTATCAAAGAGCAAGCAACATGACATTGAGGTTGTGGTAGACAGAATTGTCATCAAAGAGGGAG
TGAGAAGTCGTCTTTTTGATTCGGTCGAAGCTGCTTTACGGATTGCAGAGGGCTATGTAGTTATTGATACCATGGATGGG
AAAGAACTGCTCTTTTCTGAGCATTATGCCTGTCCGGTTTGTGGCTTTACGGTGCCAGAACTTGAGCCACGTCTCTTCTC
TTTCAATGCGCCCTTTGGCTCTTGTCCGGACTGTGATGGCTTGGGAGTAAAACTAGAAGTAGACTTAGATCTTGTGGTGC
CAGATTCTAGTATGACTTTACGAGAAGGTGCACTGGCGCCCTGGAATCCGATCTCTTCCAACTACTACCCGCAGATGCTA
GAACAGGCGATGACCTCCTTTGGCATTGATATGGACAAGCCTTTTGAAGAGCTAAGTGAAGAAGAAAAGCAATTGATTTT
CTTTGGCTCAGATGGACGAGAATTCCATTTCCACTATGAAAATGAATTCGGAGGCGTGCGAGATATTGACATACCTTTTG
AGGGAGTAGTTACCAATATCAACCGTCGTTACCATGAAACTAATAGTGACTATACTAGAACTCAGATGCGAACCTATATG
AATGAGTTGTTCTGTGTAGCTTGTCATGGCTATCGTCTTAGTCCTCAGGCCTTATCAGTCAGGGTTGGGGGTGAAGCTGG
TTTGCATATTGGTGAGATTTCAGACTTGTCCATTGCAGATCATTTGCTTCAGTTGGACAAGCTTAGCTTGACAGACAACG
AAGCTACGATTGCTCGACCTATTCTCAAAGAAATTCATGACCGGCTAACCTTCCTCAATAATGTTGGTCTTAATTACTTG
ACCCTATCTCGTTCTGCCGGAACTTTATCAGGGGGCGAGAGTCAGCGGATTCGCTTGGCGACCCAGATTGGTTCTAATTT
GAGTGGCGTTCTTTATATTCTTGATGAACCATCGATTGGTTTGCATCAGCGTGACAATGACCGCCTAATTGCCAGCCTTA
AGAAGATGCGTGACCTAGGAAATACCCTCATTGTAGTTGAGCACGATGAGGACACCATGCGGGAGGCTGACTGGCTGATT
GATGTCGGGCCAGGAGCGGGAGTCTTTGGTGGTGAAATTGTAGCAGCTGGTACTCCTGCACAAGTGGCTAAGAATAAAAA
GTCTATTACTGGACAGTACCTATCAGGCAAGCGTGAAATACCAGTACCACTGGAACGTCGTGTAGGAAATGGGCGGTTTA
TCGAAATTACAGGTGCGGCTGAAAATAATTTACAGAACATTACAGCTCGTTTCCCGCTTGGGAAGTTTATCGCTGTGACG
GGAGTTTCGGGATCCGGCAAATCGACCTTGGTCAACTCTATTCTAAAAAAGACCTTGGCTCAAAGACTCAATCGTAATTC
GGATAAGCCTGGAAAATTTAAAACGATCTCTGGAGTAGATTATATAGATCGTTTAATCGATATTGATCAAAGTCCAATTG
GTCGGACACCGCGCTCCAACCCTGCCACCTACACTGGAGTTTTTGATGATATTCGGGATCTTTTTGCTCAAACCAATGAA
GCCAAGATTCGTGGCTATAAGAAGGGTCGTTTTAGTTTTAACGTGAAGGGTGGCCGTTGTGAGGCTTGCTCGGGTGACGG
TATCATCAAAATCGAAATGCATTTCTTACCAGATGTTTATGTTCCTTGTGAAGTTTGTCATGGAAGACGCTACAACAGTG
AGACCTTAGAAGTACACTACAAGGAAAAGAATATCTCACAAATCTTAGATATGACTGTTAATGATGCAGTTGATTTCTTC
AAACATATTCCAAAGATCAATCGGAAGCTACAAACAATTAAAGATGTGGGCCTAGGGTATGTTACTTTAGGACAGCCAGC
GACTACTCTATCGGGTGGTGAAGCCCAGCGGATGAAGCTGGCTAGTGAGCTCCACAAGAGATCGACTGGCAAGTCGCTCT
ATATCTTGGATGAACCGACGACCGGACTTCATACAGAAGACATTTCTCGTCTGCTAAAAGTTCTAGATCGTTTCGTTGAT
GATGGAAATACCGTCTTAGTTATTGAGCACAATCTAGATGTGATTAAGACAGCTGACCATATTATTGATTTAGGCCCAGA
AGGTGGTGTCGGTGGTGGTACGATTATTGCAACTGGTACACCAGAGGAGGTCGCCGCAAACCCAACTAGCTATACTGGTC
AGTATCTGAAAGAGAAGTTGCATCAAAAATAG

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(624-860)

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-397)

UvrA interaction domain (UvrA_inter)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

90.138

100

0.901
  uvrA Streptococcus pneumoniae TIGR4

90.138

100

0.901
  uvrA Streptococcus pneumoniae D39

90.138

100

0.901