Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ICC24_RS09525 Genome accession   NZ_CP065029
Coordinates   1849816..1850595 (+) Length   259 a.a.
NCBI ID   WP_003181756.1    Uniprot ID   A0A1Y0YKK2
Organism   Bacillus licheniformis strain LCDD6     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1844816..1855595
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ICC24_RS09505 (ICC24_09505) trmFO 1845513..1846817 (+) 1305 WP_003181748.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ICC24_RS09510 (ICC24_09510) xerC 1846884..1847798 (+) 915 WP_011197974.1 tyrosine recombinase XerC -
  ICC24_RS09515 (ICC24_09515) hslV 1847812..1848357 (+) 546 WP_003181752.1 ATP-dependent protease subunit HslV -
  ICC24_RS09520 (ICC24_09520) hslU 1848374..1849777 (+) 1404 WP_003181754.1 HslU--HslV peptidase ATPase subunit -
  ICC24_RS09525 (ICC24_09525) codY 1849816..1850595 (+) 780 WP_003181756.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ICC24_RS09530 (ICC24_09530) flgB 1850949..1851338 (+) 390 WP_003181758.1 flagellar basal body rod protein FlgB -
  ICC24_RS09535 (ICC24_09535) flgC 1851338..1851790 (+) 453 WP_009328519.1 flagellar basal body rod protein FlgC -
  ICC24_RS09540 (ICC24_09540) fliE 1851804..1852121 (+) 318 WP_003181764.1 flagellar hook-basal body complex protein FliE -
  ICC24_RS09545 (ICC24_09545) fliF 1852172..1853773 (+) 1602 WP_003181766.1 flagellar basal-body MS-ring/collar protein FliF -
  ICC24_RS09550 (ICC24_09550) fliG 1853787..1854803 (+) 1017 WP_206114507.1 flagellar motor switch protein FliG -
  ICC24_RS09555 (ICC24_09555) fliH 1854787..1855554 (+) 768 WP_009328518.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29073.42 Da        Isoelectric Point: 4.8196

>NTDB_id=505880 ICC24_RS09525 WP_003181756.1 1849816..1850595(+) (codY) [Bacillus licheniformis strain LCDD6]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=505880 ICC24_RS09525 WP_003181756.1 1849816..1850595(+) (codY) [Bacillus licheniformis strain LCDD6]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1Y0YKK2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467