Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   MY9_RS05860 Genome accession   NC_017743
Coordinates   1171494..1172072 (+) Length   192 a.a.
NCBI ID   WP_014663442.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1166494..1177072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS05840 (MY9_1140) hemAT 1167006..1168304 (-) 1299 WP_041521497.1 heme-based aerotactic transducer HemAT -
  MY9_RS05845 (MY9_1141) - 1168443..1169972 (-) 1530 WP_014663439.1 FAD-dependent oxidoreductase -
  MY9_RS05850 (MY9_1142) - 1170084..1170941 (+) 858 WP_014663440.1 SDR family oxidoreductase -
  MY9_RS05855 (MY9_1143) - 1170968..1171201 (-) 234 WP_014663441.1 IDEAL domain-containing protein -
  MY9_RS05860 (MY9_1144) comK 1171494..1172072 (+) 579 WP_014663442.1 competence transcription factor ComK Regulator
  MY9_RS05865 (MY9_1145) - 1172117..1173016 (-) 900 WP_041521291.1 SDR family oxidoreductase -
  MY9_RS05870 (MY9_1146) - 1173232..1173501 (+) 270 WP_014663444.1 excalibur calcium-binding domain-containing protein -
  MY9_RS05875 (MY9_1147) - 1173545..1175014 (-) 1470 WP_014663445.1 sodium:solute symporter -
  MY9_RS05880 (MY9_1148) - 1175011..1175211 (-) 201 WP_014663446.1 DUF3311 domain-containing protein -
  MY9_RS05885 (MY9_1149) - 1175421..1175783 (-) 363 WP_014663447.1 hypothetical protein -
  MY9_RS05890 (MY9_1150) - 1175935..1176558 (+) 624 WP_014663448.1 TVP38/TMEM64 family protein -
  MY9_RS05895 (MY9_1151) lepB 1176560..1177066 (+) 507 WP_014663449.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22402.66 Da        Isoelectric Point: 7.7153

>NTDB_id=50588 MY9_RS05860 WP_014663442.1 1171494..1172072(+) (comK) [Bacillus sp. JS]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVSMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=50588 MY9_RS05860 WP_014663442.1 1171494..1172072(+) (comK) [Bacillus sp. JS]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGTGTGTTTTATGTCAGCATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCTCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATTTCCTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAGGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTGGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995

Multiple sequence alignment