Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   I6L84_RS07510 Genome accession   NZ_CP077224
Coordinates   1536189..1539020 (-) Length   943 a.a.
NCBI ID   WP_060553833.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1531189..1544020
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS07480 (I6L84_07480) nusB 1531358..1531783 (-) 426 WP_045504424.1 transcription antitermination factor NusB -
  I6L84_RS07485 (I6L84_07485) - 1531776..1532165 (-) 390 WP_008809845.1 Asp23/Gls24 family envelope stress response protein -
  I6L84_RS07490 (I6L84_07490) efp 1532185..1532745 (-) 561 WP_009754238.1 elongation factor P -
  I6L84_RS07495 (I6L84_07495) - 1532880..1533983 (-) 1104 WP_060553836.1 SPFH domain-containing protein -
  I6L84_RS07500 (I6L84_07500) - 1533992..1534924 (-) 933 WP_060553835.1 Tim44-like domain-containing protein -
  I6L84_RS07505 (I6L84_07505) - 1534976..1536037 (-) 1062 WP_060553834.1 Xaa-Pro peptidase family protein -
  I6L84_RS07510 (I6L84_07510) uvrA 1536189..1539020 (-) 2832 WP_060553833.1 excinuclease ABC subunit UvrA Machinery gene
  I6L84_RS07515 (I6L84_07515) - 1539150..1540094 (+) 945 WP_008809852.1 magnesium transporter CorA family protein -
  I6L84_RS07520 (I6L84_07520) - 1540113..1540787 (+) 675 WP_060553832.1 DUF1129 domain-containing protein -
  I6L84_RS07525 (I6L84_07525) - 1540825..1541334 (-) 510 WP_060553831.1 GNAT family N-acetyltransferase -
  I6L84_RS07530 (I6L84_07530) - 1541533..1542552 (-) 1020 WP_060553830.1 hypothetical protein -

Sequence

Protein


Download         Length: 943 a.a.        Molecular weight: 104313.45 Da        Isoelectric Point: 6.1790

>NTDB_id=505820 I6L84_RS07510 WP_060553833.1 1536189..1539020(-) (uvrA) [Streptococcus gordonii strain FDAARGOS 1454]
MQDKIVIHGARAHNLKNIDVEIPRDKLVVVTGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQFLGNMEKPDVDSIDGL
SPAISIDQKTTSKNPRSTVGTVTEINDYLRLLYARVGTPYCVNGHGAITASSVEQIVDQVLELPERQRLQILAPVIRKKK
GQHKTVFDKIQKDGYVRVRVDGEIYDVTEVPDLSKSKQHDIEVVVDRIVIKEGVRSRLFDSVEAALRIAEGYVVIDTMDG
KELLFSEHYACPVCGFTVPELEPRLFSFNAPFGSCPDCDGLGVKLEVDLDLVVPDSSMTLREGALAPWNPISSNYYPQML
EQAMTSFGIDMDKPFEELSEEEKQLIFFGSDGREFHFHYENEFGGVRDIDIPFEGVVTNINRRYHETNSDYTRTQMRTYM
NELSCVACHGYRLSPQALSVRVGGEAGLHIGEISDLSIADHLLQLDKLSLTDNEATIARPILKEIHDRLTFLNNVGLNYL
TLSRSAGTLSGGESQRIRLATQIGSNLSGVLYILDEPSIGLHQRDNDRLIASLKKMRDLGNTLIVVEHDEDTMREADWLI
DVGPGAGVFGGEIVAAGTPAQVAKNKKSITGQYLSGKREIPVPLERRVGNGRFIEITGAAENNLQNITARFPLGKFIAVT
GVSGSGKSTLVNSILKKTLAQRLNRNSDKPGKFKTISGVDYIDRLIDIDQSPIGRTPRSNPATYTGVFDDIRDLFAQTNE
AKIRGYKKGRFSFNVKGGRCEACSGDGIIKIEMHFLPDVYVPCEVCHGRRYNSETLEVHYKEKNISQILDMTVNDAVDFF
KHIPKINRKLQTIKDVGLGYVTLGQPATTLSGGEAQRMKLASELHKRSTGKSLYILDEPTTGLHTEDISRLLKVLDRFVD
DGNTVLVIEHNLDVIKTADHIIDLGPEGGVGGGTIIATGTPEEIAANPTSYTGQYLKEKLHQK

Nucleotide


Download         Length: 2832 bp        

>NTDB_id=505820 I6L84_RS07510 WP_060553833.1 1536189..1539020(-) (uvrA) [Streptococcus gordonii strain FDAARGOS 1454]
ATGCAAGATAAAATTGTGATCCATGGAGCGCGAGCTCATAATCTAAAAAATATTGATGTAGAAATTCCTAGAGACAAGCT
GGTTGTGGTGACAGGATTATCCGGTTCAGGTAAGTCTAGTCTGGCTTTTGACACTCTCTATGCTGAGGGGCAACGTCGCT
ATGTTGAGAGTTTGTCGGCCTATGCTCGGCAGTTCTTAGGTAATATGGAAAAGCCGGATGTGGACTCAATTGATGGTCTT
AGCCCGGCTATTTCCATCGATCAAAAGACGACTAGTAAAAATCCCCGTTCAACTGTGGGAACTGTTACTGAAATCAATGA
CTACTTGCGCTTGCTCTATGCCCGTGTTGGCACGCCATACTGTGTCAACGGCCACGGAGCTATTACGGCTTCCTCTGTTG
AGCAGATTGTAGACCAAGTCTTGGAGCTTCCAGAGCGCCAGCGCTTGCAGATTTTGGCGCCAGTTATCCGCAAGAAAAAG
GGCCAGCATAAGACTGTCTTTGATAAAATTCAGAAAGATGGCTACGTCCGAGTGCGCGTGGATGGTGAAATTTACGATGT
GACAGAAGTTCCTGACCTATCAAAGAGCAAGCAACATGACATTGAGGTTGTGGTAGACAGAATTGTCATCAAAGAGGGAG
TGAGAAGTCGTCTTTTTGATTCGGTCGAAGCTGCTTTACGGATTGCAGAGGGCTATGTAGTTATTGATACCATGGATGGG
AAAGAACTGCTCTTTTCTGAGCATTATGCCTGTCCGGTTTGTGGCTTTACGGTGCCAGAACTTGAGCCACGTCTCTTCTC
TTTCAATGCGCCCTTTGGCTCTTGTCCGGACTGTGATGGCTTGGGAGTAAAACTAGAAGTAGACTTAGATCTTGTGGTGC
CAGATTCTAGTATGACTTTACGAGAAGGTGCACTGGCACCCTGGAATCCGATCTCTTCCAACTACTATCCGCAGATGCTA
GAACAGGCGATGACCTCCTTTGGCATTGATATGGACAAACCTTTTGAAGAGCTAAGTGAAGAAGAAAAGCAATTGATTTT
CTTTGGCTCAGATGGACGAGAATTCCATTTCCACTATGAAAATGAATTTGGAGGCGTGCGAGATATTGACATTCCTTTTG
AGGGAGTGGTGACCAATATCAACCGTCGCTACCATGAGACCAATAGTGACTATACTCGGACCCAGATGCGAACCTATATG
AATGAGTTGTCCTGTGTAGCGTGTCATGGCTATCGTCTTAGTCCTCAGGCCTTATCAGTCAGGGTTGGGGGTGAAGCAGG
TTTGCATATTGGTGAGATTTCAGACTTGTCCATTGCAGATCATTTGCTTCAGTTGGACAAGCTTAGCTTGACAGACAACG
AAGCTACGATTGCTCGGCCTATTCTCAAAGAAATTCATGATCGGCTAACCTTCCTCAATAACGTTGGTCTTAATTACTTG
ACCCTATCTCGTTCTGCTGGTACATTATCAGGAGGCGAAAGCCAGCGGATTCGCTTGGCGACCCAGATTGGTTCTAATTT
GAGTGGCGTTCTTTATATTCTTGATGAACCATCGATTGGCTTGCACCAGCGTGACAATGACCGCCTGATTGCCAGCCTTA
AGAAGATGCGTGACCTAGGAAATACCCTCATCGTGGTTGAGCACGATGAGGACACCATGCGGGAGGCTGACTGGCTGATT
GATGTCGGGCCAGGAGCAGGAGTCTTTGGTGGTGAAATAGTTGCAGCTGGTACTCCTGCACAAGTGGCTAAGAATAAGAA
GTCTATCACTGGACAGTACCTATCAGGCAAGCGTGAAATTCCAGTACCACTGGAACGTCGTGTAGGAAATGGGCGTTTTA
TCGAAATTACAGGTGCGGCTGAAAATAATTTACAGAACATTACAGCTCGTTTCCCACTTGGGAAGTTTATCGCTGTGACG
GGAGTTTCGGGATCCGGCAAATCGACCTTGGTCAACTCTATTCTAAAAAAGACCTTGGCTCAAAGACTCAATCGTAATTC
GGATAAGCCTGGAAAATTTAAAACGATCTCTGGAGTAGATTATATAGATCGTTTAATCGATATTGATCAAAGTCCAATTG
GTCGGACACCGCGCTCCAACCCTGCCACCTACACTGGAGTTTTTGATGATATTCGGGATCTTTTTGCTCAAACCAATGAA
GCCAAGATTCGTGGCTATAAGAAGGGTCGTTTTAGTTTTAACGTGAAGGGTGGCCGTTGTGAGGCTTGCTCGGGTGACGG
TATCATCAAAATCGAAATGCATTTCTTACCAGATGTTTATGTTCCTTGTGAAGTTTGTCATGGAAGACGCTACAACAGTG
AGACCTTAGAAGTACACTACAAGGAAAAAAATATCTCACAAATCTTAGATATGACAGTCAATGATGCAGTTGATTTCTTC
AAACATATTCCAAAGATCAATCGGAAGCTACAAACAATTAAAGATGTGGGCCTAGGGTATGTTACTTTAGGACAGCCAGC
GACTACTCTATCGGGTGGTGAAGCCCAGCGGATGAAGCTGGCTAGTGAGCTTCACAAGAGATCGACCGGCAAGTCGCTCT
ATATCTTGGATGAACCGACGACTGGCCTTCATACAGAGGATATCTCTCGCTTGCTAAAAGTTCTGGATCGTTTCGTTGAT
GATGGAAATACCGTCTTAGTTATTGAGCACAATCTAGATGTGATTAAGACAGCTGACCATATTATTGATTTAGGCCCAGA
AGGTGGTGTCGGTGGTGGTACGATTATTGCAACTGGTACACCAGAGGAGATCGCCGCAAACCCAACTAGCTATACTGGTC
AGTATCTGAAAGAGAAGTTGCATCAAAAATAG

Domains

Predicted by InterProScan.

UvrA DNA-binding domain (UvrA_DNA-bind)

(288-397)

ABC transporter (ABC_tran)

(624-860)

UvrA interaction domain (UvrA_inter)

(132-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

90.032

100

0.9
  uvrA Streptococcus pneumoniae TIGR4

90.032

100

0.9
  uvrA Streptococcus pneumoniae D39

90.032

100

0.9