Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   I6L84_RS07330 Genome accession   NZ_CP077224
Coordinates   1497592..1498860 (+) Length   422 a.a.
NCBI ID   WP_060553850.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1492592..1503860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS07305 (I6L84_07305) - 1494265..1495008 (-) 744 WP_060553853.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  I6L84_RS07310 (I6L84_07310) prmA 1495009..1495962 (-) 954 WP_060553929.1 50S ribosomal protein L11 methyltransferase -
  I6L84_RS07315 (I6L84_07315) - 1496107..1496577 (-) 471 WP_060553852.1 GNAT family N-acetyltransferase -
  I6L84_RS07320 (I6L84_07320) - 1496574..1497024 (-) 451 Protein_1420 NUDIX hydrolase -
  I6L84_RS07325 (I6L84_07325) - 1497034..1497504 (-) 471 WP_060553851.1 DUF3013 family protein -
  I6L84_RS07330 (I6L84_07330) rarA 1497592..1498860 (+) 1269 WP_060553850.1 replication-associated recombination protein A Machinery gene
  I6L84_RS07340 (I6L84_07340) - 1499285..1500424 (-) 1140 WP_002911106.1 site-specific integrase -
  I6L84_RS07345 (I6L84_07345) - 1500426..1500614 (-) 189 WP_000369785.1 DUF3173 domain-containing protein -
  I6L84_RS07350 (I6L84_07350) - 1500626..1501603 (-) 978 WP_002896713.1 hypothetical protein -
  I6L84_RS07355 (I6L84_07355) - 1501649..1501831 (-) 183 WP_002916824.1 hypothetical protein -
  I6L84_RS07360 (I6L84_07360) - 1502038..1502547 (+) 510 WP_060553849.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46673.20 Da        Isoelectric Point: 5.8708

>NTDB_id=505817 I6L84_RS07330 WP_060553850.1 1497592..1498860(+) (rarA) [Streptococcus gordonii strain FDAARGOS 1454]
MPENLALRMRPTDIDQIIGQQHLVGPGKIIRRMVEANRLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKTKQDFLLPLLESGLVIMIGATTENPFFSVTPAIRSRVQIFELEPLSNDDIRTAIQ
LALTDKERGFDFPVELDDDALDFIAISTNGDLRSAYNSLDLAVLSTPEDNKGIRHITLDVMENSLQKSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQRIGFPEARILIANIV
IDLALSPKSNSAYVAMDKALADLRKNGNLPIPRHLRDGHYAGSKELGNAQDYLYPHSYPGNWVKQDYLPDKIKDANYFTP
NENGKYERALGMTKDKIDQLKK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=505817 I6L84_RS07330 WP_060553850.1 1497592..1498860(+) (rarA) [Streptococcus gordonii strain FDAARGOS 1454]
ATGCCAGAAAACCTCGCCCTGCGCATGCGTCCTACCGATATTGATCAGATCATCGGCCAGCAACATCTGGTCGGACCCGG
GAAAATCATCCGTCGCATGGTTGAAGCCAACCGCCTGTCCTCGATGATTCTCTACGGGCCACCCGGCATCGGCAAGACCT
CCATCGCCTCAGCTATTGCCGGCACAACCAAGTTCGCCTTTCGGACCTTTAACGCCACGGTAGATAGCAAGAAGCGCCTG
CAAGAGATCGCTGAAGAAGCGAAATTTTCCGGCGGACTGGTGCTCCTACTGGATGAGATTCATCGCTTGGACAAGACCAA
GCAAGACTTTCTCCTGCCACTATTAGAAAGCGGTCTGGTCATCATGATTGGAGCGACGACAGAAAATCCTTTCTTTTCTG
TCACCCCAGCCATCCGAAGTCGGGTTCAGATATTTGAGCTTGAACCCCTCAGCAACGACGACATCCGGACAGCCATTCAG
CTAGCCTTGACAGATAAGGAAAGAGGATTTGATTTCCCAGTGGAGCTAGACGATGATGCTCTGGATTTCATTGCCATCTC
TACCAACGGAGACCTGCGCTCTGCTTATAATTCACTGGATTTAGCCGTACTCTCTACCCCAGAAGATAACAAGGGCATTC
GCCACATCACACTTGATGTCATGGAAAACAGCCTACAAAAGAGCTACATCACCATGGATAAGGACGGGGACGGCCATTAC
GATGTCCTCTCTGCCCTGCAGAAGTCCATCCGTGGCTCCGATGTCAATGCCAGCCTCCACTACGCAGCTCGGCTCGTTGA
GGCAGGAGATCTGCCTAGCCTAGCTCGACGCCTGACCGTTATTGCTTACGAGGATATTGGCCTAGCAAATCCTGACGCCC
AAGTCCATACCGTTACAGCTCTAGAAGCGGCTCAGCGGATTGGCTTTCCTGAAGCCCGTATCCTTATTGCCAATATTGTC
ATTGATTTGGCACTTTCTCCTAAGTCCAACTCAGCCTACGTGGCTATGGACAAGGCCTTGGCCGACCTAAGAAAGAATGG
AAATCTGCCCATCCCACGCCACTTACGTGATGGCCACTATGCCGGAAGCAAGGAATTAGGCAACGCACAGGACTATCTCT
ACCCTCACTCCTATCCTGGCAATTGGGTCAAGCAGGACTACCTGCCCGATAAGATAAAAGACGCCAATTATTTCACGCCT
AACGAAAACGGCAAATACGAGCGAGCCCTTGGAATGACAAAGGATAAGATTGATCAGCTCAAAAAATGA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-410)

AAA C-terminal domain (AAA_assoc_2)

(173-251)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

59.569

99.052

0.59