Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I0509_RS01085 Genome accession   NZ_CP065028
Coordinates   238857..240230 (+) Length   457 a.a.
NCBI ID   WP_003729197.1    Uniprot ID   A0A0E0USD9
Organism   Listeria monocytogenes strain UKVDL9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 233857..245230
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0509_RS01065 (I0509_01065) - 234211..234669 (+) 459 WP_003723894.1 CtsR family transcriptional regulator -
  I0509_RS01070 (I0509_01070) - 234682..235200 (+) 519 WP_070264310.1 UvrB/UvrC motif-containing protein -
  I0509_RS01075 (I0509_01075) - 235197..236219 (+) 1023 WP_003735362.1 protein arginine kinase -
  I0509_RS01080 (I0509_01080) - 236248..238710 (+) 2463 WP_070264308.1 ATP-dependent Clp protease ATP-binding subunit -
  I0509_RS01085 (I0509_01085) radA 238857..240230 (+) 1374 WP_003729197.1 DNA repair protein RadA Machinery gene
  I0509_RS01090 (I0509_01090) - 240364..241437 (+) 1074 WP_069009920.1 PIN/TRAM domain-containing protein -
  I0509_RS01095 (I0509_01095) ispD 241457..242155 (+) 699 WP_070264306.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  I0509_RS01100 (I0509_01100) ispF 242148..242621 (+) 474 WP_070215645.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  I0509_RS01105 (I0509_01105) gltX 242640..244115 (+) 1476 WP_070264304.1 glutamate--tRNA ligase -
  I0509_RS01110 (I0509_01110) epsC 244515..245129 (+) 615 WP_003726845.1 serine O-acetyltransferase EpsC -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 50006.64 Da        Isoelectric Point: 7.6580

>NTDB_id=505817 I0509_RS01085 WP_003729197.1 238857..240230(+) (radA) [Listeria monocytogenes strain UKVDL9]
MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIESETEKRVETNMPELN
RVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTAALMRIAKMQNIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYFE
GERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFG
NAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTG
EIRRVARIEQRVQEAAKLGFKRIFIPKNNEGTWKIPKDVQVVGVETIGEALKKALPD

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=505817 I0509_RS01085 WP_003729197.1 238857..240230(+) (radA) [Listeria monocytogenes strain UKVDL9]
ATGGCTAAAGCAAAAAGGACAACCAAATTTGTGTGTCAGGCATGTGGATATGAATCGGCTAAATGGATGGGAAAATGTCC
GAATTGCAATGAGTGGAACCAGATGGTAGAAGCTTTGGAGCCATCAAAAAAATCGCGCTCAGCTTTTAATCATACGGGAG
AGCCTTCGAAAGCGACTCCGATTACTCAAATAGAAAGTGAAACAGAAAAACGTGTCGAAACCAATATGCCGGAGTTAAAT
AGAGTTCTTGGTGGAGGTGTGGTTCCAGGATCTATGGTACTTGTCGGCGGGGACCCCGGTATCGGGAAGTCGACTTTATT
ACTGCAAGTTTCAGCTCAACTGACGCTCACAAATAAAAAGGTATTGTATATATCAGGAGAAGAATCTATCAAACAAACGA
AGCTACGGGCGGAACGCTTGCAAGTTTCGGGAGATAATTTATATGTGTATGCAGAAACAAATTTAGAAGCAGTTCAAGAA
ACGATTGATTTTGTGAAGCCTGATTTTGTAGTCATTGACTCTATTCAGACGGTTTATCATCCGGATGTAACGAGTGCAGC
AGGTAGTGTTTCGCAAGTTAGGGAATGTACAGCGGCATTGATGCGAATTGCTAAAATGCAAAACATTGCTATCTTTATTG
TTGGGCATGTAACGAAGGAAGGTGCTATTGCGGGACCGCGCCTGCTTGAACATATGGTTGATACTGTGCTTTATTTTGAA
GGGGAGCGTCATCATGCTTACCGGATTTTGCGTGCAGTGAAAAACCGTTTTGGTTCCACTAACGAAATGGGTATATTTGA
AATGCGAGATGTTGGACTTGTAGAAGTTGCTAATCCTTCCGAAGTGTTCTTGGAAGAACGTCTTGAAGGCGCTTCAGGCT
CAACGGTTGTAGCTTCTATGGAAGGAACTCGTCCAGTTCTTGTGGAAATTCAAGCGCTTGTTTCACCTACGATGTTTGGT
AATGCTAAGCGAATGGCGACAGGAATAGACTATAATAAAGTTTCCCTAATTATGGCCGTTTTAGAAAAAAGAGTAGGTTT
GATGCTACAAAACCAAGACGCTTACTTGAAAGCAGCTGGCGGGGTTAAGCTAGATGAACCTGCAGTGGATTTGGCGGTTG
CAGTGAGTGTGGCGTCTAGTTATCGTGATAAACCAACGAGAAGTACAGATTGTTTTATCGGAGAACTTGGACTTACGGGT
GAAATTCGTCGTGTAGCAAGAATTGAGCAACGCGTGCAAGAAGCAGCAAAACTTGGCTTTAAGCGAATTTTTATTCCGAA
AAACAATGAAGGTACTTGGAAAATACCAAAAGACGTGCAAGTGGTTGGCGTGGAAACGATTGGAGAAGCTTTGAAGAAGG
CTTTACCAGATTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(10-37)

Subunit ChlI of Mg-chelatase (ChlI)

(363-429)

AAA domain (AAA_25)

(63-221)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0E0USD9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

68.64

99.781

0.685
  radA Streptococcus pneumoniae Rx1

65.265

98.906

0.646
  radA Streptococcus pneumoniae D39

65.265

98.906

0.646
  radA Streptococcus pneumoniae R6

65.265

98.906

0.646
  radA Streptococcus pneumoniae TIGR4

65.265

98.906

0.646
  radA Streptococcus mitis NCTC 12261

65.265

98.906

0.646
  radA Streptococcus mitis SK321

65.044

98.906

0.643