Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrR   Type   Regulator
Locus tag   I6L84_RS06930 Genome accession   NZ_CP077224
Coordinates   1409577..1410035 (-) Length   152 a.a.
NCBI ID   WP_012130789.1    Uniprot ID   A8AZ12
Organism   Streptococcus gordonii strain FDAARGOS 1454     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1404577..1415035
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L84_RS06915 (I6L84_06915) manA 1404967..1405911 (-) 945 WP_060553898.1 mannose-6-phosphate isomerase, class I -
  I6L84_RS06920 (I6L84_06920) rcrQ 1406071..1407828 (-) 1758 WP_060553897.1 ABC transporter ATP-binding protein Regulator
  I6L84_RS06925 (I6L84_06925) rcrP 1407818..1409584 (-) 1767 WP_060553936.1 ABC transporter ATP-binding protein Regulator
  I6L84_RS06930 (I6L84_06930) rcrR 1409577..1410035 (-) 459 WP_012130789.1 MarR family winged helix-turn-helix transcriptional regulator Regulator
  I6L84_RS06935 (I6L84_06935) - 1410308..1410877 (-) 570 WP_060553896.1 hypothetical protein -
  I6L84_RS06940 (I6L84_06940) - 1410887..1411297 (-) 411 WP_060553895.1 peptide deformylase -
  I6L84_RS06945 (I6L84_06945) scrK 1411346..1412245 (-) 900 WP_045504231.1 fructokinase ScrK -
  I6L84_RS06950 (I6L84_06950) - 1412486..1413010 (-) 525 WP_060954889.1 hypothetical protein -
  I6L84_RS06955 (I6L84_06955) glmS 1413126..1414937 (-) 1812 WP_060553894.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17556.33 Da        Isoelectric Point: 8.5458

>NTDB_id=505814 I6L84_RS06930 WP_012130789.1 1409577..1410035(-) (rcrR) [Streptococcus gordonii strain FDAARGOS 1454]
MEKPLLEFKRFGRKTQRIIEKRAKVCGMEFMGGPQGQVLHIVSHRAKRGLSTFIRDIEHELDISKSVASNLIKRMEKNGS
IFLEVSETDKRAKMIHLTAQSKQQLKELHDFFNEIDRCLLQGVSEEELATFTLVMAKFHQNIEKLESEDANV

Nucleotide


Download         Length: 459 bp        

>NTDB_id=505814 I6L84_RS06930 WP_012130789.1 1409577..1410035(-) (rcrR) [Streptococcus gordonii strain FDAARGOS 1454]
TTGGAAAAGCCTTTATTAGAATTCAAACGCTTTGGCAGAAAAACTCAACGGATCATAGAGAAACGCGCTAAGGTTTGTGG
GATGGAATTTATGGGAGGTCCACAAGGTCAAGTTCTTCATATCGTATCTCACCGAGCGAAGAGAGGACTTTCGACCTTTA
TTAGGGATATTGAGCATGAGTTAGATATTTCTAAGTCGGTGGCCAGCAATCTAATCAAACGGATGGAAAAAAATGGATCC
ATCTTTCTTGAGGTAAGCGAGACAGATAAAAGGGCCAAGATGATTCATTTAACAGCCCAGTCTAAACAACAATTGAAAGA
GTTACATGATTTTTTTAATGAAATCGATCGCTGTCTCCTCCAGGGTGTTTCAGAAGAAGAATTGGCAACCTTCACTCTGG
TTATGGCGAAATTCCACCAAAATATTGAGAAATTAGAAAGCGAGGATGCCAATGTTTAA

Domains

Predicted by InterProScan.

MarR family (MarR_2)

(33-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8AZ12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrR Streptococcus mutans UA159

40.411

96.053

0.388