Detailed information NTG0505785

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: I6L84_RS04330
• Genome accession: NZ_CP077224
• Coordinates: 870208..871320 (-)
• Length: 370 a.a.
• NCBI ID: WP_045773332.1
• Uniprot ID: -
• Organism: Streptococcus gordonii strain FDAARGOS 1454
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 865208..876320

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L84_RS04295 (I6L84_04295)	mnmE	865441..866814 (+)	1374	WP_060553519.1	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	-
I6L84_RS04300 (I6L84_04300)	-	866965..867534 (-)	570	WP_060553518.1	TlpA disulfide reductase family protein	-
I6L84_RS04305 (I6L84_04305)	-	867972..868670 (-)	699	WP_060553517.1	LrgB family protein	-
I6L84_RS04310 (I6L84_04310)	-	868663..869043 (-)	381	WP_008809214.1	CidA/LrgA family protein	-
I6L84_RS04325 (I6L84_04325)	-	869817..870155 (-)	339	WP_045503289.1	metal-sulfur cluster assembly factor	-
I6L84_RS04330 (I6L84_04330)	rpoS	870208..871320 (-)	1113	WP_045773332.1	RNA polymerase sigma factor RpoD	Regulator
I6L84_RS04335 (I6L84_04335)	dnaG	871323..873104 (-)	1782	WP_282954018.1	DNA primase	-
I6L84_RS04340 (I6L84_04340)	mscL	873310..873690 (+)	381	WP_045503293.1	large conductance mechanosensitive channel protein MscL	-
I6L84_RS04345 (I6L84_04345)	rpsU	873799..873975 (-)	177	WP_000048054.1	30S ribosomal protein S21	-
I6L84_RS04350 (I6L84_04350)	-	874102..874785 (-)	684	WP_048780162.1	DUF4956 domain-containing protein	-
I6L84_RS04355 (I6L84_04355)	-	874796..875527 (-)	732	WP_060553515.1	polyphosphate polymerase domain-containing protein	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42375.05 Da
• Isoelectric Point: 4.5140

>NTDB_id=505785 I6L84_RS04330 WP_045773332.1 870208..871320(-) (rpoS) [Streptococcus gordonii strain FDAARGOS 1454]
MATKQKEVTTFDVQVAEFIRNHKKAGTAIDDEINDKLIIPFTLDADGIEDLLQRIQDAGISITDKEGNPSARVLHNEEEE
AELTDEELLGSNSAKVNDPVRMYLKEIGVVPLLTNEEEQELAILVEQGDTEAKQRLAEANLRLVVSIAKRYVGRGMQFLD
LIQEGNMGLMKAVDKFDYTKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLVREQRNLLQELGQDPTPEQI
AERMDMTPDKVREILKIAQEPVSLETPIGEEDDSHLGDFIEDEVIENPVDYTTRVVLREQLDEVLDTLTDREENVLRLRF
GLDDGKMRTLEDVGKVFNVTRERIRQIEAKALRKLRHPSRSKPLRDFIED

Nucleotide

• Length: 1113 bp

>NTDB_id=505785 I6L84_RS04330 WP_045773332.1 870208..871320(-) (rpoS) [Streptococcus gordonii strain FDAARGOS 1454]
ATGGCTACAAAACAAAAAGAAGTAACAACATTTGACGTACAAGTTGCAGAATTTATTCGAAACCATAAAAAGGCTGGTAC
GGCAATTGATGATGAAATTAATGATAAATTGATTATTCCTTTTACCTTAGATGCAGATGGTATCGAAGATTTGTTGCAAC
GTATTCAAGATGCAGGGATTTCTATTACAGATAAAGAAGGGAATCCAAGTGCACGTGTTTTACACAACGAAGAGGAAGAA
GCAGAGCTAACTGATGAAGAACTTTTAGGTAGCAATTCAGCTAAAGTCAATGATCCTGTTCGTATGTATCTGAAAGAAAT
TGGAGTCGTTCCACTTTTGACAAACGAAGAAGAGCAAGAATTGGCAATCTTGGTTGAGCAGGGCGATACTGAGGCTAAGC
AACGTTTGGCTGAAGCCAACCTTCGTTTGGTAGTTTCTATTGCTAAGCGTTATGTTGGACGTGGCATGCAGTTCCTTGAC
TTGATCCAAGAAGGAAATATGGGCTTGATGAAGGCTGTTGACAAGTTTGACTACACCAAAGGATTTAAGTTTTCAACATA
TGCAACTTGGTGGATCCGTCAGGCCATTACACGTGCGATCGCTGATCAAGCTAGAACAATCCGAATCCCAGTTCACATGG
TAGAAACAATTAACAAGCTAGTTCGTGAGCAACGCAATCTCTTGCAAGAATTGGGTCAAGATCCAACGCCTGAGCAGATT
GCTGAGCGTATGGATATGACTCCAGACAAGGTTCGTGAGATTCTCAAGATTGCTCAAGAGCCAGTTTCGCTAGAAACACC
TATCGGTGAGGAAGATGATAGCCATCTGGGTGACTTTATCGAAGACGAAGTAATTGAAAATCCAGTTGATTACACAACTC
GTGTTGTTCTTCGTGAGCAGTTAGATGAAGTTTTAGACACTCTTACAGATCGTGAAGAAAATGTTCTTCGTCTTCGTTTT
GGTTTGGATGATGGTAAAATGCGGACCTTGGAAGATGTTGGTAAAGTTTTCAATGTGACACGTGAACGCATTCGCCAAAT
TGAAGCTAAAGCTCTACGCAAATTACGCCACCCAAGCCGTAGTAAGCCACTCCGTGATTTCATTGAAGATTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (136-205)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (98-130)

• Sigma-70 factor, region 1.1 (Sigma70_r1_1) (14-87)

• Sigma-70 region 3 (Sigma70_r3) (215-291)

• Sigma-70, region 4 (Sigma70_r4) (304-357)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	46.918	78.919	0.37