Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   HCQ94_RS02955 Genome accession   NZ_CP064951
Coordinates   737525..739294 (+) Length   589 a.a.
NCBI ID   WP_166981718.1    Uniprot ID   -
Organism   Actinomyces sp. zg-332     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 732525..744294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCQ94_RS02935 (HCQ94_02935) - 732797..733501 (+) 705 WP_166981710.1 B3/4 domain-containing protein -
  HCQ94_RS02940 (HCQ94_02940) - 733666..735006 (+) 1341 WP_166981713.1 exonuclease domain-containing protein -
  HCQ94_RS02945 (HCQ94_02945) - 735284..735718 (+) 435 WP_166977504.1 MarR family transcriptional regulator -
  HCQ94_RS02950 (HCQ94_02950) rcrP 735763..737535 (+) 1773 WP_198426299.1 ABC transporter ATP-binding protein Regulator
  HCQ94_RS02955 (HCQ94_02955) rcrQ 737525..739294 (+) 1770 WP_166981718.1 ABC transporter ATP-binding protein Regulator
  HCQ94_RS06275 - 739392..739589 (+) 198 WP_269775640.1 DUF1304 family protein -
  HCQ94_RS02965 (HCQ94_02965) - 740072..741100 (+) 1029 WP_198426300.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  HCQ94_RS02970 (HCQ94_02970) - 741126..741776 (+) 651 WP_198426301.1 hypothetical protein -
  HCQ94_RS02975 (HCQ94_02975) - 741892..742902 (+) 1011 WP_166981721.1 YdcF family protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 65416.96 Da        Isoelectric Point: 7.0357

>NTDB_id=505779 HCQ94_RS02955 WP_166981718.1 737525..739294(+) (rcrQ) [Actinomyces sp. zg-332]
MKTKKKPSLFLRLKPHTKGFRIPFAISVVGAIVSSIVTVIGPDKLKEITNIIVEGLKPTKTGQFLGIDLEKITSIAIFLV
ILYIISALAGYIQGYTIATVVQKFSQRLRSSIARKINNIPLNYYDSHLQGDTLSRVTNDVDLTSQSLNNSLGTLINSVIL
LIGSLIMMFLVNVTMAFTTVGSVLVGFIFVSIIMKFSQPLFVQQQSNVAAVNGYVEEIYSGHNVITSYNAIEQASKKFVE
LNNKLHSSMWKSQFFSGIMMPLMIFIGNFGFVMVCVVGAVLVIKGHITIGDVVAFMAYVRIFSQPLGQIAQGITQLQAAS
AAMNRVFEFLAEEEMEEESQKSQKLENLEGNVDFNNVYFGYSEDKTIIKDFSASAKSGQKIAIVGPTGAGKTTIVNLLMR
FYEIDKGGIFIDGVNITEMKRSEIHDAFSMVLQDTWLFEGTVKENLIYNRRNITDEEIVNAAKAVGVHHFIQTLPEGYDT
YLDDSVTLSVGQKQLLTIARALIKDSPLLILDEATSSVDTRTEEVIQRAMDKLMEGRTSFIIAHRLSTIKNADLILFMKD
GNIVEQGNHDELMFKNGLYANLYNSQFVK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=505779 HCQ94_RS02955 WP_166981718.1 737525..739294(+) (rcrQ) [Actinomyces sp. zg-332]
ATGAAAACTAAAAAGAAGCCTTCCTTATTTTTACGTCTGAAACCGCATACTAAAGGTTTTAGAATTCCGTTTGCGATTTC
AGTAGTTGGTGCCATTGTTTCTTCTATAGTCACTGTAATTGGTCCAGATAAGTTAAAAGAAATAACTAACATTATCGTAG
AAGGACTAAAGCCAACTAAAACAGGTCAGTTTTTAGGTATTGACTTAGAAAAAATTACTTCAATTGCTATCTTTTTAGTG
ATTCTGTATATCATTTCGGCACTAGCTGGATACATACAAGGATATACAATTGCTACAGTAGTGCAGAAGTTTAGTCAGAG
ATTACGCTCATCAATTGCGCGTAAAATCAATAATATCCCGTTGAACTATTACGATAGTCATTTACAAGGAGATACTCTTT
CTAGAGTAACTAATGATGTTGATCTGACTTCTCAGTCTTTAAATAATAGCTTAGGTACTTTGATTAACTCTGTTATCTTG
CTAATTGGATCTTTAATAATGATGTTCCTCGTAAATGTTACTATGGCTTTTACAACTGTAGGATCAGTGCTAGTTGGTTT
CATTTTTGTAAGTATTATTATGAAGTTTTCTCAACCACTATTTGTTCAACAACAGTCAAATGTTGCCGCTGTGAATGGAT
ACGTTGAAGAAATTTATTCAGGTCACAATGTTATCACTAGCTACAATGCTATAGAACAAGCAAGTAAAAAATTCGTGGAA
CTCAATAATAAGCTACATTCTTCAATGTGGAAATCTCAATTCTTCTCAGGAATAATGATGCCACTAATGATATTCATTGG
TAACTTTGGATTCGTAATGGTATGTGTAGTAGGAGCAGTACTAGTTATTAAAGGACATATTACTATTGGTGACGTAGTTG
CTTTTATGGCATATGTTCGAATTTTTTCTCAGCCACTTGGCCAAATAGCTCAAGGTATAACTCAGCTTCAAGCAGCTAGT
GCAGCTATGAATAGGGTATTTGAGTTCTTGGCTGAAGAAGAAATGGAAGAAGAATCCCAAAAGAGCCAAAAGCTAGAAAA
TCTTGAAGGCAACGTTGATTTTAATAATGTGTATTTTGGCTATTCTGAAGATAAAACAATTATCAAAGATTTCTCAGCTT
CAGCCAAATCTGGGCAAAAAATTGCTATTGTAGGACCAACAGGAGCTGGTAAAACAACAATAGTTAATTTACTAATGCGG
TTCTATGAAATAGACAAAGGTGGAATTTTTATTGACGGTGTTAATATAACTGAGATGAAACGTAGCGAAATACATGATGC
ATTTTCAATGGTTCTACAAGATACCTGGTTATTTGAAGGAACTGTGAAAGAGAATTTGATTTACAACCGTAGAAATATTA
CTGATGAAGAAATAGTAAATGCTGCTAAAGCTGTTGGTGTACATCATTTTATTCAGACTTTGCCTGAAGGATATGATACT
TACTTAGATGATTCAGTTACATTATCAGTTGGGCAAAAACAGCTACTTACGATAGCTCGTGCTTTGATAAAAGATTCTCC
ACTTTTGATTCTGGATGAAGCTACTTCATCAGTTGATACGCGTACTGAAGAAGTTATACAACGAGCAATGGATAAGTTAA
TGGAAGGACGTACTTCTTTTATTATTGCTCACCGTTTATCAACGATTAAAAACGCTGATCTAATCTTATTCATGAAAGAT
GGAAATATAGTTGAACAAGGTAATCATGACGAGCTTATGTTCAAGAATGGTTTATACGCAAACTTGTACAACTCTCAGTT
TGTAAAATAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(25-306)

ABC transporter (ABC_tran)

(369-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

67.692

99.321

0.672