Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   HCQ94_RS02950 Genome accession   NZ_CP064951
Coordinates   735763..737535 (+) Length   590 a.a.
NCBI ID   WP_198426299.1    Uniprot ID   -
Organism   Actinomyces sp. zg-332     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 730763..742535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HCQ94_RS02925 (HCQ94_02925) - 731253..731756 (+) 504 WP_166977486.1 hypothetical protein -
  HCQ94_RS02930 (HCQ94_02930) - 732139..732786 (+) 648 WP_166981708.1 aspartate/glutamate racemase family protein -
  HCQ94_RS02935 (HCQ94_02935) - 732797..733501 (+) 705 WP_166981710.1 B3/4 domain-containing protein -
  HCQ94_RS02940 (HCQ94_02940) - 733666..735006 (+) 1341 WP_166981713.1 exonuclease domain-containing protein -
  HCQ94_RS02945 (HCQ94_02945) - 735284..735718 (+) 435 WP_166977504.1 MarR family transcriptional regulator -
  HCQ94_RS02950 (HCQ94_02950) rcrP 735763..737535 (+) 1773 WP_198426299.1 ABC transporter ATP-binding protein Regulator
  HCQ94_RS02955 (HCQ94_02955) rcrQ 737525..739294 (+) 1770 WP_166981718.1 ABC transporter ATP-binding protein Regulator
  HCQ94_RS06275 - 739392..739589 (+) 198 WP_269775640.1 DUF1304 family protein -
  HCQ94_RS02965 (HCQ94_02965) - 740072..741100 (+) 1029 WP_198426300.1 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase -
  HCQ94_RS02970 (HCQ94_02970) - 741126..741776 (+) 651 WP_198426301.1 hypothetical protein -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 65799.59 Da        Isoelectric Point: 7.2025

>NTDB_id=505778 HCQ94_RS02950 WP_198426299.1 735763..737535(+) (rcrP) [Actinomyces sp. zg-332]
MSSLAIVFVVINVWLELKIPEYMSEITTLLNTKGTQASEIFYWNFTSPGSKMLLLSLISFASSILTAFFAARVAAAFSTT
LRSKIFHSVLGYSNAEVKEFSVPSLLTRTTNDITQIQMLITIGLQVVTKGPIMAIWAMTKIADKGHEWLLATLVAVSVVA
LLMLILLVLAFPKQKIIQKMTDKLNSVTRESLNGIRVVRAYNAEKYQYDKFEVANDRLTKLNLFVNRLMALMTPVIMTIS
GTLSLSIYWIGAHLIEDVAIAKNPAQIPQAIAKKVDIFSDMVVFSSYAMMVVFGFMMMVMLFMFLPRAIVSANRINEVLD
KKSSIEYFPHTTQEPIGKGHIEFDKVSFKYADTSEPVLENVTFSAKPGETIAFIGSTGSGKSTLVSLVTRFYDVTSGSIK
IDGVDIRQYSNEDLHNKVGFIPQKPVLFSGDIKSNIDMGISIESPLNEEKIWEALELAQARNFVEEKEGKINSHVAQSGS
NFSGGQKQRLAIARALARKPEILIFDDSFSALDYKTDYILRSELKEKTADMTKLIVAQRISTIMDADQILVLDEGKVVGK
GTHKQLLESNEIYQEIAYSQLSKKELENEN

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=505778 HCQ94_RS02950 WP_198426299.1 735763..737535(+) (rcrP) [Actinomyces sp. zg-332]
ATGAGTTCTTTAGCAATTGTATTTGTAGTAATAAATGTCTGGTTAGAACTAAAAATTCCAGAGTATATGTCAGAGATTAC
TACACTTCTTAACACTAAGGGCACGCAAGCTAGTGAAATATTCTATTGGAATTTCACAAGCCCTGGCTCTAAAATGCTTC
TGCTTTCACTTATAAGCTTTGCCTCATCAATTTTAACAGCATTTTTTGCTGCGCGTGTGGCTGCTGCTTTTTCTACCACT
CTTAGATCAAAGATTTTTCACTCAGTTTTGGGTTATTCAAATGCTGAAGTTAAAGAATTTAGCGTGCCAAGTCTTTTGAC
TCGTACAACAAACGATATTACTCAAATACAAATGCTTATAACTATTGGTCTACAAGTAGTAACTAAAGGACCTATTATGG
CAATTTGGGCTATGACTAAAATAGCAGATAAAGGTCATGAGTGGCTTTTAGCAACGCTAGTCGCTGTATCAGTAGTTGCA
CTGTTAATGCTTATACTGCTTGTTCTTGCCTTCCCTAAGCAAAAAATTATTCAAAAAATGACTGATAAATTGAATAGTGT
TACACGCGAATCTCTAAATGGTATACGAGTAGTGCGTGCTTATAATGCGGAAAAATATCAGTACGATAAATTTGAAGTAG
CTAATGATAGACTTACTAAACTTAATTTATTTGTGAATAGACTTATGGCCTTGATGACACCGGTAATTATGACAATTTCT
GGTACATTATCACTATCTATATACTGGATAGGTGCACATTTGATAGAAGATGTTGCTATTGCTAAAAATCCAGCTCAAAT
ACCACAAGCTATAGCTAAGAAAGTTGATATTTTCTCAGACATGGTTGTGTTTTCATCCTACGCCATGATGGTTGTCTTTG
GATTCATGATGATGGTAATGCTATTCATGTTCTTACCTAGAGCAATTGTTTCAGCAAACCGTATAAATGAAGTTCTTGAT
AAGAAATCTTCAATAGAATACTTTCCACATACAACTCAAGAACCAATAGGAAAAGGGCATATTGAATTCGATAAAGTATC
TTTCAAATATGCTGATACTTCTGAACCTGTATTAGAAAATGTTACTTTTAGTGCAAAACCGGGAGAGACGATTGCATTTA
TTGGATCTACAGGCTCAGGTAAATCTACATTAGTTAGCTTGGTTACTCGTTTTTATGATGTTACAAGCGGGTCAATAAAA
ATTGATGGTGTAGATATACGACAGTATTCAAATGAGGATTTACATAATAAAGTTGGATTTATTCCTCAAAAGCCTGTCTT
ATTCAGTGGCGATATTAAGTCAAATATTGACATGGGGATTAGTATTGAATCTCCTTTGAATGAAGAAAAAATTTGGGAAG
CTTTGGAACTAGCCCAAGCGCGTAATTTTGTAGAAGAAAAAGAAGGCAAGATTAATTCTCATGTCGCTCAAAGTGGTAGT
AATTTTTCAGGCGGACAAAAACAACGTCTGGCAATAGCTAGGGCATTGGCTCGTAAACCTGAGATATTAATATTCGATGA
TTCTTTCTCCGCTTTGGACTATAAGACAGACTATATTTTACGTAGTGAGCTGAAAGAAAAAACAGCTGATATGACAAAAC
TTATTGTTGCTCAACGTATATCTACAATTATGGATGCTGATCAGATTCTAGTGCTAGATGAAGGAAAAGTGGTAGGTAAA
GGAACTCATAAACAGTTGCTGGAATCTAATGAAATTTATCAAGAAATTGCTTACTCACAGCTGTCTAAGAAGGAACTAGA
AAATGAAAACTAA

Domains

Predicted by InterproScan.

ABC transporter transmembrane region (ABC_membrane)

(4-257)

ABC transporter (ABC_tran)

(358-508)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

62.988

99.831

0.629