Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   DKB71_RS29190 Genome accession   NZ_CP064949
Coordinates   6410632..6411999 (-) Length   455 a.a.
NCBI ID   WP_274074518.1    Uniprot ID   -
Organism   Pseudomonas sp. PLMAX     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 6405632..6416999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DKB71_RS29165 (DKB71_28830) - 6405920..6406609 (+) 690 WP_408598965.1 GntR family transcriptional regulator -
  DKB71_RS29170 (DKB71_28835) yjiA 6406606..6407577 (-) 972 WP_408598967.1 GTPase -
  DKB71_RS29175 (DKB71_28840) - 6407701..6407898 (-) 198 WP_007895266.1 YbdD/YjiX family protein -
  DKB71_RS29180 (DKB71_28845) - 6407914..6409980 (-) 2067 WP_408598969.1 carbon starvation CstA family protein -
  DKB71_RS29185 (DKB71_28850) - 6410141..6410509 (+) 369 WP_274074519.1 PilZ domain-containing protein -
  DKB71_RS29190 (DKB71_28855) radA 6410632..6411999 (-) 1368 WP_274074518.1 DNA repair protein RadA Machinery gene
  DKB71_RS29195 (DKB71_28860) mscL 6412618..6413031 (+) 414 WP_274074517.1 large-conductance mechanosensitive channel protein MscL -
  DKB71_RS29200 (DKB71_28865) - 6413063..6413839 (-) 777 WP_408598972.1 ferredoxin--NADP reductase -
  DKB71_RS29205 (DKB71_28870) - 6414166..6414897 (+) 732 WP_408598974.1 autoinducer binding domain-containing protein -
  DKB71_RS29210 (DKB71_28875) - 6415063..6416187 (+) 1125 WP_274074514.1 methyltransferase -
  DKB71_RS29215 (DKB71_28880) - 6416236..6416403 (-) 168 WP_323608308.1 DUF2474 domain-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 48700.16 Da        Isoelectric Point: 6.8987

>NTDB_id=505769 DKB71_RS29190 WP_274074518.1 6410632..6411999(-) (radA) [Pseudomonas sp. PLMAX]
MAKAKRMYGCTECGSTFPKWAGQCGECGAWNTLTETMVESGGAAAPSGRTGWAGQQAQIKTLAEVSVEEVPRFSTASGEL
DRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNLAKSMPALYVTGEESQQQVAMRARRLGLPQDQLRVMTETCIETIIA
TARLEKPRVMVIDSIQTIFTEQLQSAPGGVSQVRESAALLVRYAKQSGTAIFLVGHVTKEGALAGPRVLEHMVDTVLYFE
GESDGRLRLLRAVKNRFGAVNELGVFGMTDKGLKEVSNPSAIFLTRAQEEVPGSVVMATWEGTRPMLVEVQALVDDSHLA
NPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALMAAVMSSLRNRPLPHDLLVFGEVGLSG
EVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPPGLQIIAVTRLEQALDALFE

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=505769 DKB71_RS29190 WP_274074518.1 6410632..6411999(-) (radA) [Pseudomonas sp. PLMAX]
ATGGCCAAGGCCAAGCGCATGTACGGCTGCACCGAGTGTGGCTCAACCTTTCCCAAGTGGGCCGGACAATGTGGCGAGTG
CGGCGCCTGGAACACGCTCACCGAAACCATGGTGGAAAGTGGCGGGGCAGCGGCGCCCAGCGGTCGCACCGGCTGGGCCG
GCCAGCAGGCGCAAATCAAGACCCTTGCTGAAGTCAGTGTCGAGGAAGTCCCGCGTTTCTCCACGGCTTCCGGTGAGCTC
GACCGGGTGCTCGGTGGCGGCCTGGTAGACGGCTCGGTAGTGCTGATCGGCGGCGATCCCGGCATCGGCAAATCCACCAT
TCTGCTGCAAACCTTGTGCAATCTGGCCAAGAGCATGCCGGCGTTGTATGTCACGGGCGAAGAGTCGCAGCAGCAGGTGG
CCATGCGCGCCCGACGCCTGGGGCTGCCTCAGGATCAGCTACGGGTCATGACCGAAACCTGCATTGAAACCATCATTGCC
ACCGCCCGGCTGGAAAAGCCCCGGGTCATGGTGATCGACTCGATCCAGACGATTTTCACCGAGCAACTGCAATCGGCGCC
GGGTGGCGTGTCTCAGGTTCGCGAAAGCGCGGCGCTGTTGGTGCGTTATGCCAAACAGAGTGGCACCGCGATTTTCCTTG
TGGGGCACGTGACCAAGGAAGGCGCCCTGGCGGGGCCGCGGGTGCTGGAGCACATGGTCGACACCGTACTGTATTTTGAA
GGTGAATCCGACGGGCGCCTGCGCCTGTTGCGGGCGGTAAAAAATCGTTTCGGCGCGGTTAACGAACTGGGCGTGTTCGG
CATGACCGACAAGGGCCTGAAAGAAGTCTCCAATCCTTCGGCTATTTTTCTGACCCGTGCCCAGGAAGAAGTCCCAGGCA
GTGTGGTCATGGCGACATGGGAAGGCACACGGCCGATGCTGGTGGAAGTCCAGGCGCTGGTCGATGACAGCCACTTGGCC
AATCCGCGCCGGGTGACCCTGGGCCTGGACCAGAACCGACTGGCAATGTTGTTGGCGGTCTTGCACCGGCACGGCGGCAT
TCCCACCCACGACCAGGATGTGTTTCTCAACGTGGTTGGTGGGGTGAAAGTACTGGAAACGGCATCTGACCTGGCCTTGA
TGGCAGCCGTCATGTCCAGTTTGCGTAATCGGCCGCTGCCCCATGACCTGCTGGTGTTCGGTGAGGTCGGCCTGTCCGGT
GAAGTGCGCCCGGTGCCTAGCGGTCAGGAACGCCTGAAGGAAGCGGCCAAGCACGGCTTCAAGCGGGCGATCGTGCCCAA
GGGCAATGCACCGAAAGAAGCGCCGCCGGGGTTGCAGATCATCGCGGTCACCCGACTGGAGCAGGCGCTCGACGCCCTGT
TCGAATAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(79-221)

Subunit ChlI of Mg-chelatase (ChlI)

(353-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.234

100

0.495
  radA Streptococcus pneumoniae Rx1

46.522

100

0.47
  radA Streptococcus pneumoniae R6

46.522

100

0.47
  radA Streptococcus pneumoniae TIGR4

46.522

100

0.47
  radA Streptococcus pneumoniae D39

46.522

100

0.47
  radA Streptococcus mitis SK321

46.711

100

0.468
  radA Streptococcus mitis NCTC 12261

46.491

100

0.466