Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   MY9_RS00020 Genome accession   NC_017743
Coordinates   3439..4551 (+) Length   370 a.a.
NCBI ID   WP_014662456.1    Uniprot ID   -
Organism   Bacillus sp. JS     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1..9551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MY9_RS00005 (MY9_0001) dnaA 410..1750 (+) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  MY9_RS00010 (MY9_0002) dnaN 1941..3077 (+) 1137 WP_014662455.1 DNA polymerase III subunit beta -
  MY9_RS00015 (MY9_0003) rlbA 3208..3423 (+) 216 WP_003219264.1 ribosome maturation protein RlbA -
  MY9_RS00020 (MY9_0004) recF 3439..4551 (+) 1113 WP_014662456.1 DNA replication/repair protein RecF Machinery gene
  MY9_RS00025 (MY9_0005) remB 4569..4814 (+) 246 WP_003219266.1 extracellular matrix regulator RemB -
  MY9_RS00030 (MY9_0006) gyrB 4869..6785 (+) 1917 WP_014662457.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  MY9_RS00035 (MY9_0007) gyrA 6996..9461 (+) 2466 WP_014662458.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42266.25 Da        Isoelectric Point: 7.3660

>NTDB_id=50571 MY9_RS00020 WP_014662456.1 3439..4551(+) (recF) [Bacillus sp. JS]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPVHAGISRGLEELTLKYHTALDVSDSVDLSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=50571 MY9_RS00020 WP_014662456.1 3439..4551(+) (recF) [Bacillus sp. JS]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGTGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCTATGGCGAAATCGCACAGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAAGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTTGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGACCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTAAAACAGCTGCAAACAAGAAAACAAACAGACCGGACGATGCTCGATGTTTTGACCGATCAGCTTGTGGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAAAAATGGGCGCAGCCCGTCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCTTGAAGTACCATACAGCTCTTGATGTATCAGATTCCGTAGACTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGCGGTGTTACTTTGTCAGGGCCTCATCG
TGACGATGTCCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992

Multiple sequence alignment