Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IYR97_RS04175 Genome accession   NZ_CP064943
Coordinates   943001..944371 (+) Length   456 a.a.
NCBI ID   WP_023534442.1    Uniprot ID   A0A0S4I6M7
Organism   Pseudomonas fulva strain ZDHY316     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 938001..949371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IYR97_RS04145 (IYR97_04145) cydB 938174..939181 (+) 1008 WP_027914389.1 cytochrome d ubiquinol oxidase subunit II -
  IYR97_RS04150 (IYR97_04150) - 939193..939345 (+) 153 WP_033695023.1 DUF2474 domain-containing protein -
  IYR97_RS04155 (IYR97_04155) - 939421..940545 (-) 1125 WP_027914390.1 methyltransferase -
  IYR97_RS04160 (IYR97_04160) - 940643..941350 (-) 708 WP_196110708.1 autoinducer binding domain-containing protein -
  IYR97_RS04165 (IYR97_04165) - 941556..942332 (+) 777 WP_027914392.1 ferredoxin--NADP reductase -
  IYR97_RS04170 (IYR97_04170) mscL 942411..942821 (-) 411 WP_023534347.1 large-conductance mechanosensitive channel protein MscL -
  IYR97_RS04175 (IYR97_04175) radA 943001..944371 (+) 1371 WP_023534442.1 DNA repair protein RadA Machinery gene
  IYR97_RS04180 (IYR97_04180) - 944434..945951 (-) 1518 WP_027914393.1 nucleobase:cation symporter-2 family protein -
  IYR97_RS04185 (IYR97_04185) - 946214..946579 (-) 366 WP_027914394.1 PilZ domain-containing protein -
  IYR97_RS04190 (IYR97_04190) - 946642..947376 (-) 735 WP_196110449.1 lytic polysaccharide monooxygenase auxiliary activity family 9 protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48784.20 Da        Isoelectric Point: 6.8985

>NTDB_id=505705 IYR97_RS04175 WP_023534442.1 943001..944371(+) (radA) [Pseudomonas fulva strain ZDHY316]
MAKAKRLYGCTECGATFPKWAGQCGECGAWNTLVETMIESGGAAAPSTGRAGWTGQQAQIKTLAEVSVEEIPRFTTSSTE
LDRVLGGGLVDGSVVLIGGDPGIGKSTILLQTLCNIAVGMPALYVTGEESQQQVAMRSRRLGLPQDQLKVMTETCIETII
ATARQEKPRVMVIDSIQTIFTEQLQSAPGGVAQVRESTALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGESDGRLRLLRAVKNRFGAVNELGVFGMTDRGLKEVSNPSAIFLNRTQEEVPGSVVMATWEGTRPMLVEVQALVDDSHL
ANPRRVTLGLDQNRLAMLLAVLHRHGGIPTHDQDVFLNVVGGVKVLETASDLALLAAVMSSLRNRPLAHGLLVFGEIGLS
GEVRPVPSGQERLKEAAKHGFKRAIVPKGNAPKEAPAGLQVIAVTRLEQALDALFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=505705 IYR97_RS04175 WP_023534442.1 943001..944371(+) (radA) [Pseudomonas fulva strain ZDHY316]
ATGGCCAAGGCCAAGCGCTTGTATGGCTGCACCGAGTGCGGCGCGACTTTTCCGAAATGGGCTGGCCAGTGTGGCGAGTG
TGGCGCCTGGAACACGCTGGTCGAAACCATGATCGAGAGCGGCGGCGCCGCAGCCCCCAGCACGGGCCGCGCCGGCTGGA
CAGGGCAGCAGGCGCAGATCAAGACCCTGGCTGAGGTCAGCGTCGAGGAGATACCGCGCTTCACCACCAGCAGCACCGAG
CTCGACCGTGTGCTGGGCGGTGGCCTGGTCGATGGCTCCGTGGTCTTGATCGGTGGCGATCCAGGGATCGGCAAATCGAC
GATTCTGCTGCAGACCCTGTGCAATATCGCCGTCGGCATGCCGGCGTTGTACGTCACTGGCGAGGAATCCCAGCAGCAGG
TGGCCATGCGCTCCCGGCGTCTGGGCCTTCCCCAGGACCAGCTCAAGGTCATGACCGAAACCTGCATCGAAACCATCATC
GCCACCGCCCGTCAGGAAAAGCCACGGGTAATGGTGATCGACTCCATCCAGACCATTTTCACCGAACAGTTGCAATCCGC
CCCGGGCGGGGTGGCGCAGGTGCGTGAAAGTACGGCGCTGCTGGTGCGTTATGCCAAGCAAAGTGGCACAGCGATCTTCC
TGGTGGGCCACGTGACCAAGGAGGGCTCGCTGGCAGGCCCGCGGGTGCTGGAGCACATGGTCGATACCGTGTTGTATTTC
GAGGGCGAATCCGACGGTCGCCTGCGGCTGCTGCGAGCGGTGAAGAACCGCTTCGGCGCGGTAAACGAGCTGGGCGTGTT
CGGCATGACCGACCGGGGTTTGAAAGAGGTCTCCAACCCCTCGGCGATCTTTCTCAATCGCACCCAGGAAGAAGTCCCGG
GCAGCGTCGTGATGGCCACTTGGGAAGGTACCCGGCCGATGCTGGTCGAGGTCCAGGCCCTGGTCGATGACAGCCACCTG
GCCAACCCGCGCCGCGTCACCCTGGGCCTGGATCAGAACCGTCTGGCCATGCTGCTGGCCGTTCTGCACCGGCATGGGGG
CATCCCGACCCACGATCAGGATGTGTTCCTGAACGTGGTGGGCGGTGTGAAAGTGTTGGAAACGGCTTCGGACCTGGCGT
TACTCGCTGCGGTCATGTCCAGCCTGCGCAATCGGCCGCTGGCCCATGGCCTGCTGGTGTTCGGGGAAATCGGCCTGTCG
GGTGAGGTGCGGCCTGTACCCAGTGGCCAGGAGCGGCTCAAGGAGGCTGCCAAGCACGGCTTCAAGCGTGCCATCGTGCC
CAAGGGTAATGCACCCAAGGAGGCGCCTGCAGGGTTGCAGGTCATCGCTGTGACGCGCCTTGAGCAGGCGCTGGATGCCT
TGTTCGAATAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(355-430)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(73-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0S4I6M7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.684

100

0.487
  radA Streptococcus pneumoniae Rx1

46.087

100

0.465
  radA Streptococcus pneumoniae D39

46.087

100

0.465
  radA Streptococcus pneumoniae TIGR4

46.087

100

0.465
  radA Streptococcus pneumoniae R6

46.087

100

0.465
  radA Streptococcus mitis NCTC 12261

45.87

100

0.463
  radA Streptococcus mitis SK321

46.053

100

0.461