Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   IZT61_RS14580 Genome accession   NZ_CP064939
Coordinates   3591858..3593234 (-) Length   458 a.a.
NCBI ID   WP_196097714.1    Uniprot ID   A0A7U3Q4G9
Organism   Pedobacter endophyticus strain JBR3-12     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3586858..3598234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IZT61_RS14565 (IZT61_14565) - 3587474..3588439 (+) 966 WP_196097709.1 tryptophan 2,3-dioxygenase family protein -
  IZT61_RS14570 (IZT61_14570) - 3588587..3589651 (+) 1065 WP_196097711.1 branched-chain amino acid aminotransferase -
  IZT61_RS14575 (IZT61_14575) - 3589856..3590320 (-) 465 WP_196097712.1 DUF4920 domain-containing protein -
  IZT61_RS14580 (IZT61_14580) radA 3591858..3593234 (-) 1377 WP_196097714.1 DNA repair protein RadA Machinery gene
  IZT61_RS14585 (IZT61_14585) - 3593336..3594232 (-) 897 WP_196097716.1 DUF6263 family protein -
  IZT61_RS14590 (IZT61_14590) - 3594272..3595045 (-) 774 WP_196097718.1 zinc-dependent peptidase -
  IZT61_RS14595 (IZT61_14595) - 3595144..3596169 (-) 1026 WP_196097720.1 Gfo/Idh/MocA family oxidoreductase -
  IZT61_RS14600 (IZT61_14600) - 3596303..3596647 (+) 345 WP_196097721.1 hypothetical protein -
  IZT61_RS14605 (IZT61_14605) - 3596765..3597442 (-) 678 WP_196097723.1 OmpA family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 50194.71 Da        Isoelectric Point: 5.5852

>NTDB_id=505692 IZT61_RS14580 WP_196097714.1 3591858..3593234(-) (radA) [Pedobacter endophyticus strain JBR3-12]
MAKSKTAYFCQSCGYESAKWLGKCPSCGQWNTFVEEIVEKAPASVPTWKTDISTRKLNKPSKVDEIQSSVERRILTGDKE
LDRVLGGGLVEGSLVLIGGEPGIGKSTLMLQLALNLQGKKLLYVSGEESEQQIKMRAERIKESGVSDCYILTETSTQNIF
KQIEILAPEVVVVDSIQTLHSSHIDSTPGSVSQVRECTAELLRFAKETGVPVFLIGHITKDGAIAGPKILEHMVDTVLQF
EGDRHHVYRILRSIKNRFGAAAELGIYEMQGSGLREVSNPSEILLSQRDEELSGIAISAMLEGARPMLIETQALVSSAAY
GTPQRSATGFDTKRMNMLLAVLEKRCGFRLSTQDVFLNIAGGIRVEDPAIDLAVLIAIISSQQDIPISSKNCFAAEVGLS
GEIRAVNRIEQRIAEADKLGFETIYISKYNLKGVDSSKYQLEIKAVGKIEEVFEMIFG

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=505692 IZT61_RS14580 WP_196097714.1 3591858..3593234(-) (radA) [Pedobacter endophyticus strain JBR3-12]
TTGGCAAAATCAAAAACTGCATATTTCTGTCAGAGTTGCGGCTACGAATCGGCAAAATGGTTGGGTAAATGTCCTTCGTG
CGGACAATGGAATACATTTGTAGAAGAAATAGTTGAAAAAGCGCCTGCATCAGTTCCGACCTGGAAAACCGATATAAGTA
CCAGAAAACTAAATAAACCGAGCAAGGTAGACGAGATTCAATCGTCAGTTGAAAGAAGAATATTAACCGGCGATAAGGAG
CTTGACCGGGTTTTGGGCGGCGGCTTGGTGGAGGGCTCTCTCGTGCTGATTGGCGGCGAGCCGGGGATTGGAAAATCGAC
CCTGATGCTTCAATTGGCGTTGAACCTGCAAGGTAAAAAACTGCTTTATGTTTCGGGCGAAGAAAGCGAGCAGCAAATTA
AAATGCGAGCGGAAAGAATCAAGGAAAGCGGCGTGTCTGACTGTTATATCTTAACCGAAACATCTACTCAGAACATTTTC
AAGCAAATAGAAATTTTGGCGCCCGAGGTTGTGGTTGTCGACTCAATCCAAACCCTCCATTCGTCTCATATCGACTCTAC
ACCGGGAAGCGTTTCACAGGTAAGGGAATGTACCGCCGAGCTGCTCAGGTTTGCAAAAGAAACGGGTGTGCCGGTTTTCC
TTATTGGCCACATCACGAAAGACGGCGCTATTGCAGGGCCAAAAATATTGGAACACATGGTCGATACCGTTTTACAGTTT
GAAGGTGATCGGCATCATGTTTACCGAATTTTGCGCTCCATTAAAAATCGTTTTGGCGCCGCAGCCGAACTTGGGATCTA
CGAAATGCAGGGAAGCGGCTTACGAGAAGTTTCCAATCCGTCTGAAATCTTACTTTCGCAACGCGATGAAGAACTGAGTG
GCATTGCAATTTCGGCCATGCTGGAGGGTGCCAGGCCAATGTTGATTGAAACACAGGCACTGGTAAGCTCGGCAGCGTAC
GGCACTCCGCAAAGATCGGCCACAGGCTTTGATACCAAACGCATGAATATGCTTTTGGCCGTGCTCGAAAAGCGCTGCGG
CTTTAGGCTGAGCACGCAAGATGTGTTCTTAAACATTGCCGGAGGGATCAGGGTTGAAGACCCGGCGATCGATTTGGCGG
TGTTAATTGCGATCATTTCCTCACAGCAGGATATTCCGATTTCGTCTAAAAACTGTTTTGCTGCCGAGGTAGGGCTGTCG
GGAGAGATTAGGGCCGTAAACAGAATTGAGCAACGCATAGCAGAGGCCGATAAACTCGGCTTTGAAACCATTTATATTTC
GAAATACAATTTAAAAGGAGTCGACAGCTCCAAATACCAATTGGAGATTAAGGCCGTTGGTAAAATTGAAGAAGTATTTG
AAATGATTTTTGGCTAA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(344-430)

AAA domain (AAA_25)

(65-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U3Q4G9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

52.826

100

0.531
  radA Streptococcus mitis NCTC 12261

50.216

100

0.507
  radA Streptococcus pneumoniae Rx1

50.216

100

0.507
  radA Streptococcus pneumoniae D39

50.216

100

0.507
  radA Streptococcus pneumoniae R6

50.216

100

0.507
  radA Streptococcus pneumoniae TIGR4

50.216

100

0.507
  radA Streptococcus mitis SK321

50

100

0.504