Detailed information NTG0505684

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: ITJ87_RS06215
• Genome accession: NZ_CP064937
• Coordinates: 1588879..1590246 (-)
• Length: 455 a.a.
• NCBI ID: WP_117966345.1
• Uniprot ID: -
• Organism: Bacteroides sp. HF-162
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1583879..1595246

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ITJ87_RS06210 (ITJ87_06210)	-	1587251..1588873 (-)	1623	WP_117966342.1	NAD(P)/FAD-dependent oxidoreductase	-
ITJ87_RS06215 (ITJ87_06215)	radA	1588879..1590246 (-)	1368	WP_117966345.1	DNA repair protein RadA	Machinery gene
ITJ87_RS06220 (ITJ87_06220)	-	1590367..1590909 (+)	543	WP_117599240.1	carbonic anhydrase	-
ITJ87_RS06225 (ITJ87_06225)	-	1590920..1591957 (-)	1038	WP_117966348.1	asparaginase	-
ITJ87_RS06230 (ITJ87_06230)	thrA	1592406..1594838 (+)	2433	WP_117966350.1	bifunctional aspartate kinase/homoserine dehydrogenase I	-

Sequence

Protein

• Length: 455 a.a.
• Molecular weight: 50192.15 Da
• Isoelectric Point: 7.1118

>NTDB_id=505684 ITJ87_RS06215 WP_117966345.1 1588879..1590246(-) (radA) [Bacteroides sp. HF-162]
MAKEKTVYVCSNCGQDSPKWVGKCPSCGMWNTYVEEVVRKEVVNKRPVSGIETAKAKPVTLHEIVADDEPRIDLHDAELN
RVLGGGLVQGSLVLIGGEPGIGKSTLVLQTVLRIPEKRILYVSGEESTRQLKLRADRLTSTSSDCLIVCETSLEQIYVHI
KNIRPDIVIIDSIQTISTETLESSPGSIAQVRECSASILRFAKETHTAVILIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLNQDHEGMSGIAIASAIEGIRPFLIEMQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISSILSSNMDTAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGLNTKKIKMELIPVRKVEEAFRALFG

Nucleotide

• Length: 1368 bp

>NTDB_id=505684 ITJ87_RS06215 WP_117966345.1 1588879..1590246(-) (radA) [Bacteroides sp. HF-162]
ATGGCTAAAGAAAAGACGGTTTATGTATGCAGCAACTGCGGACAAGACTCTCCCAAATGGGTAGGCAAGTGTCCGTCGTG
CGGAATGTGGAACACGTATGTGGAAGAGGTGGTACGGAAAGAAGTGGTGAACAAGCGTCCCGTATCGGGCATAGAAACCG
CCAAAGCCAAACCCGTAACCCTCCATGAGATTGTAGCCGATGACGAACCGCGCATCGACCTCCATGATGCCGAGCTGAAC
CGGGTACTGGGTGGTGGTCTTGTACAAGGTTCTCTTGTTTTGATTGGCGGCGAACCGGGTATTGGGAAATCCACCCTGGT
GCTACAGACCGTACTCCGCATACCGGAAAAACGTATTCTCTATGTATCCGGCGAAGAAAGCACCCGCCAATTGAAACTGC
GTGCCGACCGCTTGACAAGCACCTCCAGTGACTGCCTCATCGTGTGCGAAACTTCCCTGGAACAGATTTACGTCCACATC
AAAAATATTCGCCCGGATATAGTCATCATCGACTCCATACAGACAATTTCTACCGAAACCCTTGAATCGTCGCCTGGGAG
CATCGCCCAGGTACGGGAATGTTCCGCCTCCATCCTGCGCTTTGCCAAGGAAACGCATACGGCGGTCATCCTCATCGGGC
ATATCAATAAGGAAGGAAGCATAGCCGGCCCCAAGGTACTGGAACATATCGTGGATACCGTACTCCAGTTCGAGGGCGAC
CAACACTACATGTACCGTATCCTGCGCAGCATCAAGAACCGTTTCGGAAGTACTGCCGAACTGGGGATTTACGAAATGCG
GCAAGATGGATTGCGCCAGGTGAGCAACCCATCCGAACTGCTGCTGAACCAGGACCATGAAGGTATGAGCGGCATAGCCA
TCGCCTCCGCGATAGAAGGCATCAGACCGTTCCTCATCGAAATGCAGGCATTGGTCAGCAGTGCCGTATATGGTAACCCG
CAACGCTCTGCCACAGGGTTCGACATCCGCCGCATGAATATGCTGCTGGCCGTATTGGAAAAACGTGTAGGCTTCAAGCT
GGCACAGAAAGACGTCTTTCTCAACATTGCCGGCGGATTGAAAGTGAACGACCCGGCAATAGACCTTGCCGTCATCAGTT
CTATCCTCTCCAGCAACATGGACACGGCCATAGAGCCGGAGGTGTGCATGGCGGGAGAAATAGGTCTGTCAGGTGAAATC
CGCCCAGTGAACCGCATAGAGCAACGTATCGGAGAAGCAGAGAAACTTGGATTCAAGCGATTCATACTTCCCAAGTATAA
TATGCAAGGACTGAACACGAAGAAGATTAAAATGGAATTGATACCGGTACGGAAGGTGGAAGAAGCATTCCGTGCCTTAT
TCGGATAA

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• AAA domain (AAA_25) (72-219)

• Subunit ChlI of Mg-chelatase (ChlI) (341-427)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	50.763	100	0.512
radA	Streptococcus mitis SK321	47.912	100	0.479
radA	Streptococcus pneumoniae Rx1	47.912	100	0.479
radA	Streptococcus pneumoniae D39	47.912	100	0.479
radA	Streptococcus pneumoniae R6	47.912	100	0.479
radA	Streptococcus pneumoniae TIGR4	47.912	100	0.479
radA	Streptococcus mitis NCTC 12261	47.912	100	0.479