Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   I1H34_RS17735 Genome accession   NZ_CP064923
Coordinates   3851579..3853252 (-) Length   557 a.a.
NCBI ID   WP_212662327.1    Uniprot ID   -
Organism   Acaryochloris marina S15     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3846579..3858252
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1H34_RS17725 (I1H34_17710) - 3847028..3849391 (-) 2364 WP_212662325.1 EAL domain-containing protein -
  I1H34_RS17730 (I1H34_17715) hemL 3850017..3851315 (-) 1299 WP_212662326.1 glutamate-1-semialdehyde 2,1-aminomutase -
  I1H34_RS17735 (I1H34_17720) comA 3851579..3853252 (-) 1674 WP_212662327.1 phospholipase D-like domain-containing protein Machinery gene
  I1H34_RS17740 (I1H34_17725) - 3853264..3853986 (-) 723 WP_212662328.1 lipid-binding SYLF domain-containing protein -
  I1H34_RS17745 (I1H34_17730) - 3854241..3856694 (+) 2454 WP_212662329.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  I1H34_RS32235 - 3856714..3857691 (-) 978 WP_249369358.1 hypothetical protein -

Sequence

Protein


Download         Length: 557 a.a.        Molecular weight: 62065.10 Da        Isoelectric Point: 8.0127

>NTDB_id=505662 I1H34_RS17735 WP_212662327.1 3851579..3853252(-) (comA) [Acaryochloris marina S15]
MQRLQWGLTSLVLLGALGIGVNRWQRSQPQFQSIQPLPQHSQIQVYMNQNLANSFTDSYRQISRPGDDLESIIVENIQAA
TSTVDVAIQELRSPRIAQALRDRKQAGVQVRVILENTYSRPWSSFTSQEVARMDPRQKKRYQANFQLIDQNQDGELSSAE
IHEYDALQVLRRADIPWLDDTADGSAGSGLMHHKFVVIDGQTTIVTTANFTLSGLLGDLDQPDSRGNANSLVVLESPGLA
QLFTEEFKALWGDGPGRTTDSKFGVNKPWRPPQTLKLGNAKVQVQFSPTSISRPWSRSTNGLIRQTLAKAKQNIALALFV
FSEQSLVDQLAGEHQQGVKIRVLGDPQFAYQSYSEVLDMLGVTLSPSRSGTLTCKAEPQNRPWSPPLQTVGTPQLPKGDV
LHHKFGIVDSQIVIVGSHNWSDAANRRNDETLLVMEHPQIAEHYHREFERLYASSRLGIPAFLQKKAQDHQRQCGDLLVR
GRGTTQPVLPEGKQATLVNLNTANQSELEALPGVGPKLAERIIEARQERLFTSLADLDQVPGIGPKLLEQLRNRVTW

Nucleotide


Download         Length: 1674 bp        

>NTDB_id=505662 I1H34_RS17735 WP_212662327.1 3851579..3853252(-) (comA) [Acaryochloris marina S15]
ATGCAGCGGCTGCAATGGGGATTGACCTCTCTGGTCCTACTCGGTGCTCTAGGGATTGGGGTGAATCGTTGGCAGCGATC
GCAACCTCAATTCCAGTCCATTCAACCTCTCCCACAACATAGCCAGATTCAGGTGTATATGAACCAGAATCTGGCTAATT
CTTTTACGGATTCCTATCGGCAAATCTCCCGCCCAGGGGATGATTTAGAGTCCATTATTGTCGAGAATATCCAGGCTGCT
ACATCCACAGTAGATGTAGCAATACAGGAATTGAGATCGCCCCGTATCGCCCAGGCCCTGCGAGACCGCAAACAAGCCGG
TGTTCAGGTCCGAGTCATCTTAGAAAATACCTACAGCCGCCCTTGGAGTAGCTTTACGTCCCAAGAGGTGGCTCGGATGG
ATCCGCGGCAGAAGAAACGATACCAAGCCAATTTTCAGCTGATCGACCAAAATCAAGATGGCGAGCTGAGTTCAGCTGAA
ATCCATGAGTATGATGCCCTACAGGTACTCCGTAGAGCTGATATCCCTTGGCTGGATGATACAGCCGATGGCTCTGCCGG
AAGTGGTTTGATGCACCATAAGTTTGTAGTCATTGATGGGCAGACCACTATTGTGACGACGGCCAACTTTACTTTGTCTG
GGCTACTTGGCGACTTAGATCAGCCAGATAGTCGGGGGAATGCCAATTCTCTGGTCGTTCTGGAGAGCCCAGGTTTAGCA
CAGCTCTTTACTGAGGAATTTAAGGCCCTTTGGGGAGATGGTCCCGGTCGGACAACGGATAGCAAATTTGGAGTGAACAA
GCCCTGGCGTCCACCCCAAACTCTTAAGCTTGGTAATGCCAAAGTGCAAGTGCAATTTTCGCCAACATCTATCTCTAGGC
CTTGGTCCCGCAGTACCAACGGGCTGATCCGCCAAACCCTAGCTAAAGCCAAACAGAACATTGCTTTGGCGTTATTTGTC
TTTTCAGAGCAATCCTTGGTGGATCAGCTAGCAGGGGAGCACCAGCAAGGGGTGAAAATTCGGGTCTTGGGTGATCCTCA
GTTTGCCTATCAAAGCTATAGCGAAGTGCTCGATATGCTAGGAGTGACCCTCAGTCCCTCTCGCAGTGGAACTTTGACCT
GCAAGGCTGAACCCCAAAATCGGCCCTGGTCCCCACCCTTGCAAACCGTAGGGACACCTCAACTCCCTAAAGGAGATGTG
CTGCACCATAAATTTGGCATTGTTGATAGTCAGATCGTGATTGTGGGATCTCACAACTGGTCAGATGCGGCCAATCGTCG
CAATGATGAAACCCTACTGGTGATGGAACATCCTCAAATTGCAGAGCATTATCACCGGGAATTTGAGCGGTTGTATGCCA
GTAGCCGTCTAGGCATTCCTGCCTTTCTCCAAAAAAAAGCCCAAGACCACCAACGTCAATGTGGTGATTTGCTGGTGAGG
GGCAGGGGAACGACCCAACCCGTCTTACCAGAAGGGAAGCAAGCCACCCTCGTCAATCTGAATACCGCGAATCAATCGGA
ACTGGAGGCATTGCCTGGTGTGGGGCCCAAGTTGGCTGAACGAATAATCGAAGCTAGACAAGAACGCCTATTTACCTCCC
TAGCAGACTTAGATCAAGTTCCTGGCATAGGGCCGAAACTGCTGGAACAACTCCGAAACAGAGTGACTTGGTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(495-556)

PLD-like domain (PLDc_2)

(73-251)

PLD-like domain (PLDc_2)

(303-451)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

49.278

99.461

0.49