Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   I1H34_RS11175 Genome accession   NZ_CP064923
Coordinates   2306924..2308387 (-) Length   487 a.a.
NCBI ID   WP_212665683.1    Uniprot ID   -
Organism   Acaryochloris marina S15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2301924..2313387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I1H34_RS11160 (I1H34_11160) - 2302667..2303497 (-) 831 WP_212665680.1 alpha/beta fold hydrolase -
  I1H34_RS32930 - 2303578..2303661 (+) 84 WP_315874879.1 hypothetical protein -
  I1H34_RS11170 (I1H34_11170) - 2303930..2306599 (-) 2670 WP_212665682.1 ATP-binding protein -
  I1H34_RS11175 (I1H34_11175) radA 2306924..2308387 (-) 1464 WP_212665683.1 DNA repair protein RadA Machinery gene
  I1H34_RS11180 (I1H34_11180) rpaB 2308546..2309280 (+) 735 WP_212665684.1 response regulator transcription factor RpaB -
  I1H34_RS11185 (I1H34_11185) - 2309354..2310145 (-) 792 WP_212665685.1 TetR/AcrR family transcriptional regulator -
  I1H34_RS11190 (I1H34_11190) - 2310198..2311199 (+) 1002 WP_315874880.1 Rieske 2Fe-2S domain-containing protein -

Sequence

Protein


Download         Length: 487 a.a.        Molecular weight: 52526.34 Da        Isoelectric Point: 6.8932

>NTDB_id=505657 I1H34_RS11175 WP_212665683.1 2306924..2308387(-) (radA) [Acaryochloris marina S15]
MAKTRTHYICQECGAASPQFFGKCPSCHTWNSLVEQVVPNAPAATDGTRLAQRHRQKRNAAPQALSSLTLTQISEQPIQR
FSSGYVELDRVLGGGIVPGSLVLVGGDPGIGKSTLLLQIVNFLSSRQTVLYVCAEESGQQVKLRAQRLGIGDLILKKEIS
ETATEQKDNLENDNLYLLPETDLELVLQELDSLQPQVAIIDSIQALFFSTLTSAPGSVAQVRECTSALMRLAKRNHITLF
IVGHVTKEGAIAGPKVLEHLVDTVLYFEGDRFANHRLLRSVKNRFGATHEVGVFEMIDRGLREVLNPSELFLGDREEVSP
GTATIVACEGTRPIVVELQALVSPTSYSSPRRSTTGIEYNRLLQILAVLEKRLGIPLSKLDAYVASSGGLSVAEPAADLG
VAIALAASFRDRLVDPTTVVIGEVGLGGQVRSVSQTELRLKEALKLGFKRAIIPKGQSFPSLDIEIIPVARVADAIVAAL
PGGQSTQ

Nucleotide


Download         Length: 1464 bp        

>NTDB_id=505657 I1H34_RS11175 WP_212665683.1 2306924..2308387(-) (radA) [Acaryochloris marina S15]
ATGGCAAAAACACGAACTCATTACATTTGCCAAGAATGTGGTGCAGCTTCTCCCCAGTTTTTTGGTAAATGTCCCTCCTG
TCACACTTGGAATTCTTTAGTCGAACAAGTGGTGCCCAATGCACCTGCAGCAACAGACGGAACCCGCTTGGCGCAACGAC
ATCGCCAGAAACGTAATGCTGCCCCCCAAGCGCTTTCTTCCCTGACATTAACCCAGATTTCTGAGCAGCCAATACAGCGA
TTTAGTTCGGGTTACGTTGAACTCGATCGGGTGTTAGGGGGAGGCATTGTCCCAGGTTCTTTAGTATTGGTAGGGGGTGA
TCCGGGAATCGGAAAATCAACCCTTTTGTTGCAAATTGTCAATTTTTTAAGCTCGCGGCAAACCGTTCTCTATGTTTGCG
CGGAAGAATCTGGCCAACAGGTTAAATTACGCGCCCAGAGATTGGGAATTGGAGATTTAATTTTAAAAAAAGAGATTTCA
GAGACCGCCACTGAGCAAAAAGATAATTTAGAGAATGACAATTTATACCTGTTACCCGAAACTGACCTGGAATTGGTGCT
GCAAGAGTTAGATTCTCTGCAACCTCAGGTCGCCATTATTGATAGTATTCAAGCCCTATTTTTCTCTACTTTAACCTCGG
CCCCCGGTTCCGTCGCCCAAGTTAGGGAATGTACGTCAGCCCTGATGCGACTGGCAAAACGAAACCACATTACGTTATTT
ATCGTCGGTCACGTCACAAAGGAAGGGGCAATTGCAGGTCCCAAGGTTTTAGAACATTTAGTCGATACCGTGCTCTATTT
TGAAGGGGATCGGTTTGCGAATCACCGATTACTCCGGTCAGTGAAAAATCGGTTTGGTGCGACTCACGAAGTTGGTGTTT
TTGAAATGATTGATCGGGGCTTGCGCGAAGTCTTGAATCCATCGGAATTATTTTTGGGGGACCGCGAAGAGGTATCGCCA
GGGACCGCCACTATCGTCGCTTGCGAAGGCACCCGTCCAATTGTGGTGGAACTGCAGGCCTTGGTCAGTCCCACCAGCTA
TAGTTCACCACGCCGTTCGACGACAGGCATTGAATATAATCGGTTGCTGCAAATTCTGGCTGTGTTAGAGAAACGGCTGG
GGATTCCCCTCTCTAAGCTAGATGCCTATGTGGCTTCTTCCGGTGGATTGAGTGTGGCCGAACCCGCTGCAGATTTGGGA
GTTGCGATCGCACTCGCAGCCAGCTTCCGAGATCGCCTGGTAGACCCAACCACCGTCGTTATTGGCGAGGTGGGATTGGG
CGGCCAAGTCCGCTCCGTATCGCAAACCGAATTACGTCTGAAAGAGGCCCTCAAGTTGGGATTTAAACGGGCCATCATTC
CTAAAGGCCAGTCTTTTCCCAGTTTGGATATCGAAATCATTCCCGTTGCTCGGGTTGCCGATGCTATTGTGGCAGCTCTC
CCCGGCGGCCAATCTACACAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

KaiC (ATPase)

(84-284)

Subunit ChlI of Mg-chelatase (ChlI)

(396-455)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.129

100

0.511
  radA Streptococcus pneumoniae Rx1

45.868

99.384

0.456
  radA Streptococcus pneumoniae D39

45.868

99.384

0.456
  radA Streptococcus pneumoniae R6

45.868

99.384

0.456
  radA Streptococcus pneumoniae TIGR4

45.868

99.384

0.456
  radA Streptococcus mitis SK321

45.756

99.179

0.454
  radA Streptococcus mitis NCTC 12261

45.756

99.179

0.454