Detailed information NTG0050563

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPPC18_RS04925
• Genome accession: NC_017742
• Coordinates: 1053597..1054805 (-)
• Length: 402 a.a.
• NCBI ID: WP_000814197.1
• Uniprot ID: -
• Organism: Helicobacter pylori PeCan18
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1048597..1059805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPPC18_RS04900 (HPPC18_04965)	-	1048642..1049160 (-)	519	WP_000760576.1	hypothetical protein	-
HPPC18_RS04905 (HPPC18_04970)	-	1049157..1050101 (-)	945	WP_000362459.1	CpaF/VirB11 family protein	-
HPPC18_RS04910 (HPPC18_04975)	-	1050106..1050381 (-)	276	WP_001278753.1	hypothetical protein	-
HPPC18_RS04915 (HPPC18_04980)	-	1050398..1051360 (-)	963	WP_001095485.1	membrane protein	-
HPPC18_RS04920 (HPPC18_04985)	-	1051373..1053613 (-)	2241	WP_000730456.1	hypothetical protein	-
HPPC18_RS04925 (HPPC18_04990)	comB10	1053597..1054805 (-)	1209	WP_000814197.1	DNA type IV secretion system protein ComB10	Machinery gene
HPPC18_RS04930 (HPPC18_04995)	-	1054802..1056457 (-)	1656	WP_000617231.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HPPC18_RS04935 (HPPC18_05000)	-	1056454..1057591 (-)	1138	Protein_967	VirB8/TrbF family protein	-
HPPC18_RS08750 (HPPC18_05005)	-	1057584..1057724 (-)	141	WP_000789929.1	hypothetical protein	-

Sequence

Protein

• Length: 402 a.a.
• Molecular weight: 45048.69 Da
• Isoelectric Point: 10.0507

>NTDB_id=50563 HPPC18_RS04925 WP_000814197.1 1053597..1054805(-) (comB10) [Helicobacter pylori PeCan18]
MKQSLLKKIGLGVGGFVVLMALGLLTNKGSNNNNKEEIFQVSESKFPLSDYFFEEVKEEPKEKAKETPEVTTQEPTTQTS
PNPSVSANPNIKDYSHLNNNLNQQNNTITHLQQVLQSPSKIKPKPKHTKEQLEFLNTRLKPLEPTKPATKPEMEYGVDSF
TNLKYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRL
NIAWTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGITSALANRQNRKGDGNPFFGD
YLLMQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFISPNLDIFIPKPKDGEVLAEFFKEKKPPIKTKEEINNEE
EI

Nucleotide

• Length: 1209 bp

>NTDB_id=50563 HPPC18_RS04925 WP_000814197.1 1053597..1054805(-) (comB10) [Helicobacter pylori PeCan18]
ATGAAACAATCCTTGCTTAAAAAGATAGGCTTAGGTGTTGGGGGCTTTGTTGTTTTAATGGCATTAGGATTGCTTACTAA
TAAAGGCTCAAACAATAACAATAAAGAAGAAATCTTTCAAGTAAGTGAGAGTAAATTCCCTTTAAGTGATTATTTCTTTG
AAGAAGTCAAAGAAGAGCCAAAAGAAAAAGCCAAAGAAACACCAGAAGTAACTACCCAAGAGCCTACAACACAAACTAGC
CCCAATCCTAGTGTTTCAGCTAATCCTAACATTAAAGATTATAGTCATCTTAACAACAATCTTAATCAGCAAAATAATAC
TATCACGCATTTACAACAAGTTTTACAAAGCCCCTCTAAAATAAAGCCTAAACCAAAGCATACTAAAGAGCAATTAGAAT
TTTTAAACACACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGATGGAATACGGCGTGGATAGTTTT
ACTAATTTAAAATATAAAGACATCGGCACTAATGAGCATAAGCTTTTAAGAACCATAACCGCTGATAGAATGATACCAGC
CTTTTTAATCACGCCTATTAGCTCTCAAATTGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGG
GTAGAGCGGTGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTT
AACATTGCTTGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGG
TTATAATGGCTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTA
ATGGTCTTTTAATAGGAATTACTTCAGCCTTAGCTAATAGGCAAAATAGAAAGGGTGATGGCAACCCTTTTTTTGGGGAT
TACTTGCTTATGCAACTCACTAGAAATACAGGCATGGGCATCAATCAAGTTATCAATCAAATGCTAAGGCAATATGGAGC
GCAAAACCCCATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTAGCCCTAATTTAGACATCTTTATCCCTAAACCAA
AAGATGGGGAGGTTTTAGCGGAGTTCTTTAAAGAGAAAAAACCCCCAATCAAAACAAAAGAGGAAATTAACAATGAAGAA
GAAATCTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (178-368)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	52.538	98.01	0.515