Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HG267_RS11550 Genome accession   NZ_CP064879
Coordinates   2769162..2770790 (+) Length   542 a.a.
NCBI ID   WP_045869100.1    Uniprot ID   -
Organism   Tolypothrix sp. PCC 7601     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2764162..2775790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG267_RS11535 (HG267_11525) - 2765383..2766405 (-) 1023 WP_081583864.1 transposase -
  HG267_RS11540 (HG267_11530) - 2766540..2767652 (+) 1113 WP_255325180.1 ATP-binding protein -
  HG267_RS11545 (HG267_11535) - 2767712..2769016 (-) 1305 WP_081583941.1 amino acid permease -
  HG267_RS11550 (HG267_11540) comA 2769162..2770790 (+) 1629 WP_045869100.1 DUF655 domain-containing protein Machinery gene
  HG267_RS11555 (HG267_11545) - 2771165..2771410 (+) 246 WP_045869101.1 ChaB family protein -
  HG267_RS11560 (HG267_11550) - 2771454..2771864 (-) 411 WP_045869102.1 PleD family two-component system response regulator -
  HG267_RS11565 (HG267_11555) - 2772488..2774188 (-) 1701 WP_045869103.1 ATP-binding protein -
  HG267_RS11570 (HG267_11560) - 2774375..2775568 (+) 1194 WP_045869104.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 60673.86 Da        Isoelectric Point: 6.7235

>NTDB_id=505580 HG267_RS11550 WP_045869100.1 2769162..2770790(+) (comA) [Tolypothrix sp. PCC 7601]
MPCLYHSHNYCIFLLILALAGCQKVQSFNKLPAPLPQDPLVQVYFNHSESSEFTEPYRQQVRLGDNLEQHIVDAIAQSKS
TVDVAVQELRLPKVAQALVDRQKAGVKVRLILENTYSRPWSSFTSEEISQLEKREQERYNEVRKFIDINQDNQLSSEEIN
QRDALVIVQNAKVPLIDDKADGTAGSSLMHHKFVIVDNSIVIVTSANFTLSDVFGDYSNPSSLGNANNFLKIESPELAAL
FTEEFNTMWGDGPGGKPDSRFGLQKPARSPKTITLGETKITVQFSPTSPTQPWSQSTNGLIANTLESATKYVDMALFVFS
DQQLANVLENRHQNKVNIRALIEPQFAYRSYSEGLDMMGFALAEECKYEVDNRPWKNPITTVGVPTLPKGDLLHHKFAVI
DGNTVITGSHNWSEAANNGNDETLLVIENPKVAAHYVREFARLYTKVKLGLPLTIQQKIATEAKQCPQIKSPTSSTNQIS
PKINLNTASLEELETLPGVGKKLAQRIIIARQQQKFTSLNDLEKVPGVSTKMINKWQYTITW

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=505580 HG267_RS11550 WP_045869100.1 2769162..2770790(+) (comA) [Tolypothrix sp. PCC 7601]
GTGCCTTGTTTATATCATTCCCATAATTATTGTATTTTCTTGCTTATTCTTGCTCTAGCTGGTTGTCAAAAAGTTCAGTC
ATTCAATAAGCTTCCTGCACCCTTACCGCAAGATCCATTGGTGCAGGTTTACTTTAACCATTCCGAGTCCTCAGAATTTA
CCGAACCTTACCGTCAGCAAGTTCGTCTGGGAGATAATTTAGAACAGCATATTGTCGATGCAATTGCTCAATCTAAATCT
ACCGTCGATGTCGCCGTTCAAGAATTACGTTTACCAAAAGTAGCTCAAGCATTAGTAGATAGACAAAAAGCTGGAGTCAA
AGTCAGATTAATTTTAGAAAATACCTATAGCCGTCCTTGGAGTAGCTTCACAAGCGAGGAAATTAGCCAGTTAGAAAAAA
GGGAACAAGAACGCTATAACGAAGTTCGTAAATTTATCGATATTAACCAGGATAATCAGCTCAGTTCTGAAGAAATTAAC
CAAAGAGATGCTTTGGTAATCGTACAAAATGCCAAAGTTCCTTTAATAGATGACAAAGCCGATGGGACAGCAGGTAGCAG
TTTAATGCATCACAAATTTGTGATTGTAGACAATAGCATTGTGATTGTTACTTCTGCAAACTTCACTTTGAGCGATGTTT
TTGGAGACTATAGTAATCCCAGTAGTTTAGGCAATGCCAACAATTTCTTAAAAATAGAGAGTCCAGAACTAGCAGCTTTA
TTTACAGAAGAGTTTAACACCATGTGGGGTGATGGCCCAGGCGGTAAGCCAGATAGCCGATTTGGTTTGCAAAAACCAGC
GCGATCGCCAAAAACTATTACTTTAGGTGAAACTAAAATTACTGTACAGTTTTCGCCAACTTCACCCACTCAACCTTGGA
GTCAGAGTACAAACGGTTTAATAGCTAATACTTTAGAATCAGCTACTAAATATGTGGATATGGCATTGTTTGTATTTTCC
GATCAACAATTAGCTAATGTTCTCGAAAATCGCCATCAAAACAAAGTCAATATTCGCGCTTTAATTGAACCACAATTTGC
CTATCGTTCTTACAGCGAAGGCTTAGATATGATGGGATTTGCACTAGCTGAAGAGTGTAAATATGAAGTAGATAACCGCC
CTTGGAAAAATCCTATTACTACTGTTGGCGTACCAACTTTACCAAAAGGCGATTTATTGCATCACAAATTTGCTGTTATT
GATGGTAATACAGTAATTACAGGTTCTCATAATTGGTCAGAAGCCGCTAATAATGGTAACGATGAAACCCTACTAGTAAT
TGAAAATCCTAAAGTTGCTGCCCATTATGTACGTGAATTTGCTCGTCTTTATACAAAGGTAAAACTTGGTTTACCACTTA
CTATTCAACAAAAAATTGCAACCGAAGCCAAACAATGTCCGCAAATTAAATCTCCAACATCCAGTACAAATCAGATATCT
CCTAAAATCAATCTCAATACCGCTAGCCTAGAAGAATTAGAAACCCTACCAGGTGTTGGTAAAAAATTAGCACAGCGAAT
AATCATTGCTCGTCAACAGCAAAAGTTTACATCTTTGAATGATTTAGAAAAAGTCCCGGGTGTTAGTACCAAAATGATAA
ATAAATGGCAATATACTATTACTTGGTAG

Domains

Predicted by InterproScan.

PLD-like domain (PLDc_2)

(71-249)

PLD-like domain (PLDc_2)

(302-443)

Helix-hairpin-helix motif (HHH_3)

(481-536)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.519

99.631

0.483