Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   I0K03_RS11945 Genome accession   NZ_CP064875
Coordinates   2370101..2370379 (+) Length   92 a.a.
NCBI ID   WP_000842219.1    Uniprot ID   -
Organism   Bacillus toyonensis strain P18     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2365101..2375379
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K03_RS11925 (I0K03_11925) - 2365873..2366475 (+) 603 WP_000517300.1 hypothetical protein -
  I0K03_RS11930 (I0K03_11930) - 2366977..2368158 (+) 1182 WP_200204111.1 agmatine/peptidylarginine deiminase -
  I0K03_RS11935 (I0K03_11935) - 2368583..2368834 (-) 252 WP_000827556.1 response regulator transcription factor -
  I0K03_RS11940 (I0K03_11940) - 2369082..2369960 (+) 879 WP_000397971.1 helix-turn-helix domain-containing protein -
  I0K03_RS11945 (I0K03_11945) abrB 2370101..2370379 (+) 279 WP_000842219.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  I0K03_RS11950 (I0K03_11950) - 2370858..2372108 (+) 1251 WP_001032371.1 hypothetical protein -
  I0K03_RS11955 (I0K03_11955) - 2372176..2372934 (+) 759 WP_000347979.1 TSUP family transporter -
  I0K03_RS11960 (I0K03_11960) - 2373187..2373846 (+) 660 WP_200204113.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10296.07 Da        Isoelectric Point: 9.6266

>NTDB_id=505549 I0K03_RS11945 WP_000842219.1 2370101..2370379(+) (abrB) [Bacillus toyonensis strain P18]
MKSRGSTRKADSMGRIVIPMEIRRSLGIVEKDALEMFVEDDQIILRKYQSSQACAITGDISDKNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=505549 I0K03_RS11945 WP_000842219.1 2370101..2370379(+) (abrB) [Bacillus toyonensis strain P18]
ATGAAATCAAGAGGGAGTACTCGTAAAGCAGATAGTATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATGCGCTAGAAATGTTTGTGGAAGATGATCAGATTATTTTGCGGAAATATCAATCTTCACAAGCTT
GTGCAATTACAGGTGATATTTCAGATAAGAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGAACAGAA
CTGTTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

53.333

97.826

0.522