Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   I0K03_RS06315 Genome accession   NZ_CP064875
Coordinates   1232176..1232499 (-) Length   107 a.a.
NCBI ID   WP_000578873.1    Uniprot ID   A0A2B5EZM0
Organism   Bacillus toyonensis strain P18     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1227176..1237499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I0K03_RS06290 (I0K03_06290) - 1227497..1228783 (+) 1287 WP_088055450.1 D-alanyl-D-alanine carboxypeptidase family protein -
  I0K03_RS06295 (I0K03_06295) sipW 1228979..1229548 (+) 570 WP_000767788.1 signal peptidase I SipW -
  I0K03_RS06300 (I0K03_06300) - 1229611..1230198 (+) 588 WP_000172853.1 CalY family protein -
  I0K03_RS06305 (I0K03_06305) - 1230334..1231080 (+) 747 WP_234392450.1 DUF4047 domain-containing protein -
  I0K03_RS06310 (I0K03_06310) calY 1231508..1232101 (+) 594 WP_000053720.1 biofilm matrix protein CalY -
  I0K03_RS06315 (I0K03_06315) sinR 1232176..1232499 (-) 324 WP_000578873.1 helix-turn-helix domain-containing protein Regulator
  I0K03_RS06320 (I0K03_06320) - 1232579..1232713 (-) 135 WP_000276222.1 anti-repressor SinI family protein -
  I0K03_RS06325 (I0K03_06325) inhA1 1233059..1235446 (+) 2388 WP_088055448.1 M6 family metalloprotease immune inhibitor InhA1 -
  I0K03_RS06330 (I0K03_06330) - 1235604..1236971 (+) 1368 WP_087949144.1 aldehyde dehydrogenase -

Sequence

Protein


Download         Length: 107 a.a.        Molecular weight: 12389.26 Da        Isoelectric Point: 9.6238

>NTDB_id=505544 I0K03_RS06315 WP_000578873.1 1232176..1232499(-) (sinR) [Bacillus toyonensis strain P18]
MIGERIKRLRLQKGISLTELAEKAGVAKSYISSIERNLQKNPSIQFLEKIAAVLQIPVDTLLHDETEKEARLDSEWTQLV
KDAMNSGVSKEQFREFLEFTQWKKNQK

Nucleotide


Download         Length: 324 bp        

>NTDB_id=505544 I0K03_RS06315 WP_000578873.1 1232176..1232499(-) (sinR) [Bacillus toyonensis strain P18]
ATGATTGGAGAACGTATAAAACGCCTTCGTTTACAAAAAGGTATTTCATTAACTGAACTTGCCGAAAAAGCTGGTGTTGC
TAAATCTTACATTAGTTCTATAGAACGAAATTTACAAAAAAACCCTTCCATTCAGTTTCTTGAAAAAATCGCAGCAGTTC
TACAAATTCCAGTTGATACTTTACTTCATGACGAAACAGAAAAAGAAGCTCGCCTAGACTCCGAATGGACACAGCTCGTT
AAAGACGCAATGAACTCTGGTGTCTCTAAAGAACAGTTTCGTGAATTTCTTGAATTTACACAATGGAAGAAAAATCAAAA
ATAA

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-60)

Anti-repressor SinI (SinI)

(72-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2B5EZM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

68.807

100

0.701